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authorpjotrp2020-07-25 13:54:43 +0100
committerpjotrp2020-08-28 09:01:09 +0100
commit807492f12627cb69e5e28df0c06dc5493bb3b4e7 (patch)
tree4176869efc71e337f17739df7e2f54357aed8735 /gn/packages/genenetwork.scm
parente74299d2b15f4713884aeb71ba60a1ab9e468ddb (diff)
downloadguix-bioinformatics-807492f12627cb69e5e28df0c06dc5493bb3b4e7.tar.gz
Remove unused packages
Diffstat (limited to 'gn/packages/genenetwork.scm')
-rw-r--r--gn/packages/genenetwork.scm83
1 files changed, 2 insertions, 81 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 98be132..8d61caf 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -48,85 +48,6 @@
#:use-module (srfi srfi-1))
-
-(define-public my-deploy
- (package
- (name "my-deploy")
- (version "0.0.1")
- (source #f)
- (build-system trivial-build-system)
- (arguments
- `(#:guile ,%bootstrap-guile
- #:modules ((guix build utils))
- #:builder
- (let* ((out (assoc-ref %outputs "out"))
- (bash (assoc-ref %build-inputs "bash"))
- (foo (string-append out "/foo")))
- (begin
- (use-modules (guix build utils))
- (mkdir out)
- (call-with-output-file foo
- (lambda (p)
- (format p
- "#!~a~%echo \"${GUIX_FOO} ${GUIX_BAR}\"~%"
- bash)))
- (chmod foo #o777)
- ;; wrap-program uses `which' to find bash for the wrapper
- ;; shebang, but it can't know about the bootstrap bash in
- ;; the store, since it's not named "bash". Help it out a
- ;; bit by providing a symlink to this package's output.
- (symlink bash (string-append out "/bash"))
- (setenv "PATH" out)
- (wrap-program foo `("GUIX_FOO" prefix ("hello")))
- (wrap-program foo `("GUIX_BAR" prefix ("world")))
- #t))))
- (inputs `(("bash" ,(bootstrap-executable "bash"
- (%current-system)))))
-
- (home-page #f)
- (synopsis #f)
- (description #f)
- (license #f)))
-
-(define-public gn-server
- (let ((md5 "93e745e9c"))
- (package
- (name "gn-server")
- (version "0.0.1")
- (source
- (origin
- (method url-fetch)
- (uri "http://files.genenetwork.org/raw_database/md5sum.txt") ; any old file
- (file-name (string-append name "-" md5))
- (sha256
- (base32 "1cnkiwid4h0nnf93rm647ji9vhfzjl23arp1xj374la7mmic9jqs"))))
- (build-system trivial-build-system)
- (native-inputs `(("unzip" ,unzip)
- ("source" ,source)))
- (inputs `(("sassc" ,sassc)))
- (propagated-inputs
- `(("python" ,python)
- ("elixir" ,elixir)
- ("mariadb" ,mariadb)
- ("gnu-make" ,gnu-make) ; needed for mysqlex
- ))
- (arguments
- `(#:modules ((guix build utils))
- #:builder
- (begin
- (use-modules (guix build utils))
- (let ((target (string-append (assoc-ref %outputs "out")
- "/share")))
- (write target)
- (mkdir-p target)
- ; (copy-recursively (assoc-ref %build-inputs "source") target)
- #t))))
-
- (home-page "http://github.com/genenetwork/gn_server/")
- (synopsis "GN REST server API")
- (description "REST Server")
- (license license:agpl3+))))
-
(define-public python2-qtlreaper
(let ((commit "442c217b90393380a8634ff8636b44992f5c53dd"))
(package
@@ -202,7 +123,7 @@ location of a putative QTL.")
(package
(name "python-gunicorn-gn")
(version "19.9.0")
- (source
+ (source
(origin
(method url-fetch)
(uri (pypi-uri "gunicorn" version))
@@ -237,7 +158,7 @@ implemented, light on server resource usage, and fairly speedy.")
(define-public python2-gunicorn-gn
(package-with-python2 python-gunicorn-gn))
-
+
(define-public rust-qtlreaper
(let ((commit "2e7fed6d45b0b602d80fa2a55835f96ef1cba9e3")