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path: root/gn/packages/genenetwork.scm
AgeCommit message (Collapse)Author
3 daysGeneNetwork2: Upgrade to 32140f6Frederick Muriuki Muriithi
3 daysGeneNetwork3: Upgrade to 5ea318eFrederick Muriuki Muriithi
3 daysgn: genenetwork3: Add r-qtl2.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork3) [propagated-inputs]: Add r-qtl2. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
7 daysUpgrade gn-auth to 4c21d0e.Frederick Muriuki Muriithi
11 daysUpgrade genenetwork2 to 578a8eb.Frederick Muriuki Muriithi
11 daysImport missing module.Frederick Muriuki Muriithi
11 daysGN2, GN3, gn-auth, gn-uploader: Add nss-certs for python-requestsFrederick Muriuki Muriithi
All the flask applications mentioned above make use of python-requests library which needs the CA certificate bundle present within the environment that each application runs in. The nss-certs package installs the appropriate CA certificate bundles.
2024-10-31GeneNetwork2: Update commit and hash.Frederick Muriuki Muriithi
2024-10-15GeneNetwork3: Update commit and hash.Frederick Muriuki Muriithi
2024-10-03gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2024-09-27GeneNetwork3: Update commit and hash.Frederick Muriuki Muriithi
2024-09-27GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
Pull in fixes for WGCNA and CTL analyses.
2024-09-27GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
Pull in Pair-Scan output paths fixes
2024-09-27GeneNetwork3: Update commit and hash.Frederick Muriuki Muriithi
2024-09-27GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
Include R scripts in installed files.
2024-09-27GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
Pull in changes fixing paths for rqtl_wrapper.R script.
2024-09-27GeneNetwork3: Update commit and hash.Frederick Muriuki Muriithi
2024-09-25gn-auth: (python-blinker) New dependencyFrederick Muriuki Muriithi
2024-09-25GeneNetwork2: Update commit and hash.Frederick Muriuki Muriithi
2024-09-12GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
* Add missing python package.
2024-09-12GeneNetwork3: Update commit and hashFrederick Muriuki Muriithi
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
Update to latest commit with @pjotr's changes.
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
Push fix below: https://github.com/genenetwork/genenetwork2/commit/8618fdc8f4c05153f48e1afdbf9d2c337ba79929
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
This pushes fix for the bug caused by using relative paths for font files.
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
2024-09-11GeneNetwork2: Update commit and hashFrederick Muriuki Muriithi
This update pushes some logging of a font file. The purpose is to debug relative paths, and prove/disprove a hypothesis.
2024-09-10genenetwork2: Update commit and hashFrederick Muriuki Muriithi
2024-08-15gn: genenetwork2: Update genenetwork2 with new markdown client deps.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add javascript-ace, javascript-diff, javascript-diff2html, javascript-diff2html-ui javascript-highlight, javascript-highlight-ui, javascript-marked, javascript-marked-highlight. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-13gn-auth: Update commit and hash.Frederick Muriuki Muriithi
2024-08-08gn-auth: update commit and hash.Frederick Muriuki Muriithi
2024-08-07gn-auth: Update commit and hashFrederick Muriuki Muriithi
Update the hash to pull in fixes for the following ops issues: * Installing of Jinja2 text-file templates for emails * Logging out unhandled exceptions as errors for easier debugging
2024-08-07Production releaseFrederick Muriuki Muriithi
* GN2: 0998033d0a7ea26ed96b00a360a334bae6de8c55 * GN3: efa965c34db3662762dde8ecf376cce561d85453 * GN-AUTH: eb05221f57ec4b6a5537ac7661811ba33b4b0385
2024-07-25gn-uploader: (python-flask-session): New dependency.Frederick Muriuki Muriithi
2024-07-25gn-uploader: (python-pymonad): New dependency.Frederick Muriuki Muriithi
2024-07-25gn-uploader: (python-authlib): New dependency.Frederick Muriuki Muriithi
2024-07-17gn-auth and GN2: Update commits and hashes.Frederick Muriuki Muriithi
2024-07-15gn-auth: Add commit and revision to version. Update commit and hash.Frederick Muriuki Muriithi
2024-07-09GN3: update commit and hash.Frederick Muriuki Muriithi
2024-07-08gn-uploader: Add node-resumablejs as a dependency.update-gn3-for-production-containerFrederick Muriuki Muriithi
2024-07-08GN3: update commit and hash.Frederick Muriuki Muriithi
2024-06-28genenetwork-full-system: Do synchronised releaseFrederick Muriuki Muriithi
Do a syncronised release of the genenetwork full system (it's not actually full, since gn-uploader is not yet part of the release, but it's good enough), with the following commits for the various parts: * GeneNetwork2: deb8d7241f1ca05865fababc2799ead9a684f8be * GeneNetwork3: 9f27bdc3ca41e09a090093bc36f48851fcc4fc42 * gn-auth: c8658a764cf30605c6e5a1361dcd09ddd422e371
2024-06-14gn-uploader: (javascript-jquery): New dependencyFrederick Muriuki Muriithi
JQuery is needed to get the bootstrap plugins working correctly.
2024-06-13gn-uploader: javascript-bootstrap: New dependencyFrederick Muriuki Muriithi
Bundle javascript-bootstrap with gn-uploader for styling.
2024-06-12gn-uploader: Fix indentation.Frederick Muriuki Muriithi
2024-05-09Fix path to error GIFs.Munyoki Kilyungi
Co-authored-by: Alexander <alexanderkabua@gmail.com>
2024-04-05genenetwork2-stable: update hashPjotr Prins
2024-04-04Add recent javascript-d3 libraryPjotr Prins
2024-04-04javascript-d3panels: add variable and add to genenetwork2Pjotr Prins
2024-04-03genenetwork3-stable: update hashPjotr Prins
2024-04-03genenetwork3-stable: modify files that use R scriptsPjotr Prins