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| author | Pjotr Prins | 2024-04-04 05:49:19 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-04-04 05:49:19 -0500 |
| commit | 1a6522f3a5a7d0990e50fe5dd91f286f62e083e7 (patch) | |
| tree | e84ffac2d087db7493da2a64800c54a495008a50 /gn/packages/genenetwork.scm | |
| parent | 9dd4e53a93f7c3a9aa970b6e2a787e4122461c13 (diff) | |
| download | guix-bioinformatics-1a6522f3a5a7d0990e50fe5dd91f286f62e083e7.tar.gz | |
javascript-d3panels: add variable and add to genenetwork2
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 23 |
1 files changed, 19 insertions, 4 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index f7337c4..e3ec17f 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -220,6 +220,7 @@ javascript-cytoscape-qtip javascript-d3-tip javascript-d3js + javascript-d3panels javascript-datatables javascript-datatables-buttons javascript-datatables-buttons-bootstrap @@ -373,7 +374,7 @@ (lambda _ (begin (mkdir (string-append #$output "scripts")) - (for-each (lambda (fn) + (for-each (lambda (fn) (install-file fn (string-append #$output "/scripts"))) '("scripts/rqtl_wrapper.R" @@ -387,16 +388,30 @@ (branch "prod")))))) (define-public genenetwork2-stable - (let ((commit "42b37bba21530aab104bd2fbbddb27ce7cd7de7c") + (let ((commit "fd3de3dd7e0fac465bde193bd78085bd3434e885") (revision "1")) (package (inherit genenetwork2) (name "genenetwork2-stable") - (version (string-append "stable-" (git-version "3.11" revision commit))) + (version (string-append "stable-" (git-version "3.12" revision commit))) (source (git-checkout (url "https://github.com/genenetwork/genenetwork2") - (branch "prod")))))) + (branch "prod"))) + (arguments + (list + #:tests? #f + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'update-font-paths + (lambda* (#:key inputs outputs #:allow-other-keys) + (for-each (lambda (fn) + (substitute* (string-append "gn2/" fn) + (("\\./gn2/wqflask/static/fonts/") + (string-append (site-packages inputs outputs) "/gn2/wqflask/static/fonts/")))) + '("utility/Plot.py" + "wqflask/marker_regression/display_mapping_results.py")))) + )))))) (define-public gn-uploader (let ((commit "60fde66e02dba842b20fa126ff3b2ed9ec2638e6") |