| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-12-04 | gn: graphaligner: Update to 1.0.20. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (graphaligner): Update to 1.0.20. [arguments]: Substitute in bamtools include directory. [inputs]: Add bamtools. | |||
| 2024-12-04 | gn: graphaligner: Use search-inputs-directory. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (graphaligner)[arguments]: Use search-inputs-directory in patch-source phase. | |||
| 2024-12-03 | gnu: vg: Update to 1.61.0. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (vg): Update to 1.61.0. [arguments]: Add #:make-flags. Create obj and lib directories, and prevent them from being deleted. Install libhandlegraph.so. | |||
| 2024-12-03 | gn: vg: Build man pages unconditionally. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (vg)[arguments]: Build man pages unconditionally in the build-manpages phase. | |||
| 2024-12-03 | gn: vg: Use G-expressions. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (vg): Use G-expressions. | |||
| 2024-12-03 | gn: vg: Remove commented-out code. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (vg)[arguments]: Remove commented-out code. | |||
| 2024-10-25 | Upgrade guix channel to 2394a7f. | Arun Isaac | |
| * .guix-channel: Upgrade guix channel to 2394a7f. * gn/packages/bioinformatics.scm (pplacer)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/ocaml.scm (ocaml4.07-gsl-1)[inputs]: Replace gsl-static with (gsl "static"). * gn/packages/static.scm (wfmash-static)[inputs]: Replace gsl-static with (gsl "static"). | |||
| 2024-10-25 | gn: pplacer: Use G-expressions. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (pplacer): Use G-expressions. | |||
| 2024-10-23 | gn: graphaligner: Update to 1.0.19. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (graphaligner): Update to 1.0.19. [native-inputs]: Add (jemalloc "bin"). | |||
| 2024-10-23 | gn: graphaligner: Use G-expressions. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (graphaligner): Use G-expressions. | |||
| 2024-10-22 | gn: smoothxg: Update to 0.8.0. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (smoothxg): Update to 0.8.0. [arguments]: Remove architecture-specific -march=armv8-a+simd flag. | |||
| 2024-10-22 | gn: odgi: Update to 0.9.0. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (odgi): Update to 0.9.0. | |||
| 2024-10-22 | gn: seqwish: Update to 0.7.11. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (seqwish): Update to 0.7.11. | |||
| 2024-04-19 | gn: Add hifiasm. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (hifiasm): New variable. | |||
| 2024-02-23 | gn: bioinformatics: Import (guix build-system r). | Arun Isaac | |
| 2024-02-23 | gn: Add r-stitch. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (r-stitch): New variable. | |||
| 2024-02-23 | gn: Add vcfpp. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (vcfpp): New variable. | |||
| 2024-02-23 | gn: Add seqlib. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (seqlib): New variable. | |||
| 2024-02-23 | gn: Add r-rrbgen. | Arun Isaac | |
| * gn/packages/bioinformatics.scm (r-rrbgen): New variable. | |||
| 2023-10-19 | Remove bh20-seq-resource. | Arun Isaac | |
| The package is broken, some of its inputs have been removed from upstream Guix, and we no longer need this package. * gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable. * gn/services/bh20-seq-resource-container.scm: Delete file. | |||
| 2023-09-26 | pggb: Add missing inputs | Efraim Flashner | |
| 2023-09-26 | pggb: wrap with more packages | Efraim Flashner | |
| 2023-09-26 | gsl: Provide glibc-hwcaps version. | Efraim Flashner | |
| 2023-09-26 | vg: Update package definition | Efraim Flashner | |
| 2023-09-26 | seqwish: Provide glibc-hwcaps version | Efraim Flashner | |
| 2023-09-26 | seqwish: Build and link against shared library. | Efraim Flashner | |
| 2023-09-25 | seqwish: Make package tunable. | Efraim Flashner | |
| 2023-09-25 | vg: Link with some shared libraries. | Efraim Flashner | |
| 2023-09-24 | pggb: Fix typo. | Efraim Flashner | |
| 2023-09-24 | pggb: Provide version with glibc-hwcaps. | Efraim Flashner | |
| 2023-09-24 | smoothxg: Link with odgi | Efraim Flashner | |
| 2023-09-24 | smoothxg: Link with sdsl-lite | Efraim Flashner | |
| 2023-09-24 | seqwish: Link with sdsl-lib | Efraim Flashner | |
| 2023-09-24 | pggb: Remove python-pycairo | Efraim Flashner | |
| 2023-09-24 | pggb: Add htslib for tabix dependency. | Efraim Flashner | |
| 2023-09-22 | Add pggb. | Efraim Flashner | |
| 2023-09-22 | vg: Prepare for using a shared library. | Efraim Flashner | |
| 2023-09-22 | vg: Update to 1.50.0. | Efraim Flashner | |
| 2023-09-21 | mummer: Update to 4.0.0rc1. | Efraim Flashner | |
| 2023-09-21 | odgi: Add variant with glibc-hwcaps. | Efraim Flashner | |
| 2023-09-21 | wfmash: Fix typos. | Efraim Flashner | |
| 2023-09-21 | odgi: Update to 0.8.3. | Efraim Flashner | |
| 2023-09-21 | Add smoothxg | Efraim Flashner | |
| 2023-09-20 | seqwish: Update to 0.7.9. | Efraim Flashner | |
| 2023-09-20 | Add wfmash with glibc-hwcap libraries. | Efraim Flashner | |
| 2023-09-19 | Add pafplot | Efraim Flashner | |
| 2023-09-19 | Add fastix | Efraim Flashner | |
| 2023-09-19 | Add vcfbub | Efraim Flashner | |
| 2023-09-19 | gfaffix: Update to 0.1.5. | Efraim Flashner | |
| 2023-06-18 | Remove unused twint from GN2 | pjotrp | |
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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