| Age | Commit message (Expand) | Author |
|---|---|---|
| 2022-03-16 | gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.16367da. | BonfaceKilz |
| 2022-03-16 | gn: Add python-pixy. | Efraim Flashner |
| 2022-03-16 | gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run locally. * gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and pytest to... [propagated-inputs]: here. | BonfaceKilz |
| 2022-03-16 | gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and pytest-mock | BonfaceKilz |
| 2022-03-14 | gn: Add wfmash....This patch adds a version of wfmash that builds and runs successfully on RISC-V. * gn/packages/riscv.scm: New file. | Arun Isaac |
| 2022-03-14 | gn: tissue: Update to 0.1.0-0.17d101b....* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.17d101b. [arguments]: Substitute absolute path to git. [inputs]: Add git-minimal. | Arun Isaac |
| 2022-03-14 | gn: tissue: Update to 0.1.0-0.e62965d....* gn/packages/gemini.scm (skribilo-with-gemtext-reader): New variable. (tissue): Update to 0.1.0-0.e62965d. [arguments]: Add "GUILE_AUTO_COMPILE=0" to #:make-flags. [propagated-inputs]: Add skribilo-with-gemtext-reader. | Arun Isaac |
| 2022-03-10 | services: databases: Add virtuoso state directory configuration....* gn/services/databases.scm (<virtuoso-configuration>)[state-directory]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use state-directory. | Arun Isaac |
| 2022-03-10 | services: databases: Add virtuoso SQL server IP and port setting....* gn/services/databases.scm (<virtuoso-configuration>)[server-ip, server-port]: New fields. * gn/services/databases.scm (virtuoso-shepherd-service): Use server-ip and server-port. | Arun Isaac |
| 2022-03-10 | services: databases: Add virtuoso HTTP server configuration....* gn/services/databases.scm (<virtuoso-configuration>)[http-server-ip]: New field. * gn/services/databases.scm (virtuoso-shepherd-service): Use http-server-ip. | Arun Isaac |
| 2022-03-10 | services: databases: Prefer (guix records) to define-configuration....define-configuration does too much magic. * gn/services/databases.scm (<virtuoso-configuration>): Redefine using (guix records). Export virtuoso-configuration?. (virtuoso-shepherd-service): Represent a disabled port with #f. | Arun Isaac |
| 2022-03-07 | python-pytest-pudb: enable tests...add more to description field | jgart |
| 2022-03-03 | gn: Add pytest-pudb...* gn/packages/python.scm: New package. | BonfaceKilz |
| 2022-03-03 | gn: genenetwork3: Add python-pytest-mock...* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add python-pytest-mock. | BonfaceKilz |
| 2022-03-01 | cl-qc: update home-page and description | jgart |
| 2022-03-01 | cl-qc: update to 89a2f | jgart |
| 2022-03-01 | cl-qc: update to eaa5d | jgart |
| 2022-03-01 | packages: lisp: add cl-qc | jgart |
| 2022-02-27 | gn: Add willowmap | Efraim Flashner |
| 2022-02-18 | gn: genenetwork2: Update to 3.11-2.17652b1....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.17652b1. [arguments]: Restore the default install phase. | Arun Isaac |
| 2022-02-18 | gn: genenetwork3: List propagated inputs in plain list....Guix now prefers inputs as a plain list instead of an association list. Modernize. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use plain list instead of association list. | Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Remove implicit inputs....coreutils and diffutils are implicit inputs of the python-build-system. They don't have to be included explicitly. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove coreutils and diffutils. | Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Update to 0.1.0-2.83a7aa7....* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.83a7aa7. [arguments]: Enable tests. | Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Move test inputs to native inputs....Test inputs are not required to actually run the built program. They should therefore be in native-inputs. They should not be propagated. * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move python-mypy, python-mypy-extensions, python-pylint, python-hypothesis and python-pytest to ... [native-inputs]: ... here. | Arun Isaac |
| 2022-02-14 | Add pytest and hypothesis for automated testing...In the effort to improve automated testing, this commit adds two python modules that are useful for the tests. | Frederick Muriuki Muriithi |
| 2022-02-14 | gn: Upstream 2 julia packages | Efraim Flashner |
| 2022-02-09 | gn: genenetwork2: Add python-ijson....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-ijson. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | Alexander Kabui |
| 2022-02-09 | gn: genenetwork3: Add r-ctl....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-ctl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | Alexander Kabui |
| 2022-02-05 | gn: tissue: Add guile to inputs....* gn/packages/gemini.scm (tissue)[inputs]: Add guile-3.0. | Arun Isaac |
| 2022-02-05 | gn: Add tissue....* gn/packages/gemini.scm (tissue): New variable. | Arun Isaac |
| 2022-02-04 | remove upstreamed cl-css-lite | jgart |
| 2022-02-04 | gn: packages: lisp: remove upstreamed cl-snakes | jgart |
| 2022-02-02 | gn: packages: lisp: add cl-css-lite | jgart |
| 2022-01-31 | gn: julia package updates | Efraim Flashner |
| 2022-01-27 | gn: julia: Prepare packages for upstreaming | Efraim Flashner |
| 2022-01-27 | julia package cleanup | Efraim Flashner |
| 2022-01-27 | gn: packages: emacs-xyz: add emacs-trident-mode. | jgart |
| 2022-01-26 | add notebook-tools | jgart |
| 2022-01-26 | add jrep | jgart |
| 2022-01-26 | gn: packages: crates-io: add rust-clap-for-jrep | jgart |
| 2022-01-26 | gn: packages: quality-control: remove utf-8-lineseparator...* upstreamed to GNU Guix | jgart |
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn....* gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn. | Arun Isaac |
| 2022-01-26 | gn: packages: lisp: Add cl-scribble. | jgart |
| 2022-01-26 | gn: packages: lisp: Add cl-meta. | jgart |
| 2022-01-26 | gn: packages: lisp: Add cl-fare-memoization. | jgart |
| 2022-01-26 | gn: packages: lisp: Add cl-lorem-ipsum. | jgart |
| 2022-01-26 | gn: packages: lisp: Add sbcl-fwoar-lisputils. | jgart |
| 2022-01-26 | gn: packages: lisp: Add cl-2am. | jgart |
| 2022-01-26 | gn: packages: lisp: Add cl-defstar. | jgart |
| 2022-01-26 | gn: packages: Add cl-snakes. | jgart |
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| aboutsummaryrefslogtreecommitdiff |