| Age | Commit message (Expand) | Author |
|---|
| 2024-10-23 | gn: graphaligner: Update to 1.0.19....* gn/packages/bioinformatics.scm (graphaligner): Update to 1.0.19.
[native-inputs]: Add (jemalloc "bin").
| Arun Isaac |
| 2024-10-23 | gn: graphaligner: Use G-expressions....* gn/packages/bioinformatics.scm (graphaligner): Use G-expressions.
| Arun Isaac |
| 2024-10-22 | gn: smoothxg: Update to 0.8.0....* gn/packages/bioinformatics.scm (smoothxg): Update to 0.8.0.
[arguments]: Remove architecture-specific -march=armv8-a+simd flag.
| Arun Isaac |
| 2024-10-22 | gn: odgi: Update to 0.9.0....* gn/packages/bioinformatics.scm (odgi): Update to 0.9.0.
| Arun Isaac |
| 2024-10-22 | gn: seqwish: Update to 0.7.11....* gn/packages/bioinformatics.scm (seqwish): Update to 0.7.11.
| Arun Isaac |
| 2024-10-15 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-10-03 | gn-auth: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in fixes for WGCNA and CTL analyses.
| Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in Pair-Scan output paths fixes
| Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Include R scripts in installed files.
| Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash...Pull in changes fixing paths for rqtl_wrapper.R script.
| Frederick Muriuki Muriithi |
| 2024-09-27 | GeneNetwork3: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-25 | gn-auth: (python-blinker) New dependency | Frederick Muriuki Muriithi |
| 2024-09-25 | GeneNetwork2: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-09-12 | GeneNetwork3: Update commit and hash...* Add missing python package.
| Frederick Muriuki Muriithi |
| 2024-09-12 | GeneNetwork3: Update commit and hash | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...Update to latest commit with @pjotr's changes.
| Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...Push fix below:
https://github.com/genenetwork/genenetwork2/commit/8618fdc8f4c05153f48e1afdbf9d2c337ba79929
| Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...This pushes fix for the bug caused by using relative paths for font
files.
| Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash | Frederick Muriuki Muriithi |
| 2024-09-11 | GeneNetwork2: Update commit and hash...This update pushes some logging of a font file. The purpose is to
debug relative paths, and prove/disprove a hypothesis.
| Frederick Muriuki Muriithi |
| 2024-09-10 | Revert "gn: gemma-wrapper: updated to 0.99.7"...This reverts commit 7eaa7028ffe3e8b0d5dfe242da87dd76930f637e.
This does not include all the dependencies needed to run GEMMA. These
were included with commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070
later, but that also had to be reverted due to another issue altogether.
| Frederick Muriuki Muriithi |
| 2024-09-10 | Revert "(gn packages gemma-wrapper): Add new dependencies."...This reverts commit ab2ae88f2698cde22cae05c432f0f1ae0db7b070.
At this point, running GEMMA will fail because it attempts to extract
files into the /tmp directory, which leads to permission issues when
there is an attempt to change the permission bits of /tmp.
| Frederick Muriuki Muriithi |
| 2024-09-10 | (gn packages gemma-wrapper): Add new dependencies. | Frederick Muriuki Muriithi |
| 2024-09-10 | genenetwork2: Update commit and hash | Frederick Muriuki Muriithi |
| 2024-08-26 | gn: mouse-longevity: Remove breaking line until resolved. | jgart |
| 2024-08-21 | gn: mouse-longevity: Update to 8a7fdd3. | jgart |
| 2024-08-16 | gn: mouse-longevity: Update to d798fc1 | jgart |
| 2024-08-15 | gn: mouse-longevity: Update upstream url. | jgart |
| 2024-08-15 | Revert "rshiny: add logging for applications"...This reverts commit 57444f7e0f360eb88e11aed4217143cafb164325.
| jgart |
| 2024-08-15 | Revert "rshiny: refactor import code into define-module form"...This reverts commit 4addf0abad6c05b060ea4947512c6b413e3b750b.
| jgart |
| 2024-08-15 | gn: genenetwork2: Update genenetwork2 with new markdown client deps....* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add
javascript-ace, javascript-diff, javascript-diff2html,
javascript-diff2html-ui javascript-highlight, javascript-highlight-ui,
javascript-marked, javascript-marked-highlight.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Add javascript-highlight-ui....* gn/packages/javascript.scm (javascript-highight-ui): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Add javascript-highlight....* gn/packages/javascript.scm (javascript-highlight): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Add javascript-diff....* gn/packages/javascript.scm (javascript-diff): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Add javascript-diff2html-ui....* gn/packages/javascript.scm (javascript-diff2html-ui): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Add javascript-diff2html....* gn/packages/javascript.scm (javascript-diff2html): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-15 | gn: javascript: Update javascript-ace....* gn/packages/javascript.scm: (javascript-ace): Update License. Apply
guix style.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2024-08-13 | gn-auth: Update commit and hash. | Frederick Muriuki Muriithi |
| 2024-08-08 | gn-auth: update commit and hash. | Frederick Muriuki Muriithi |
| 2024-08-07 | gn-auth: Update commit and hash...Update the hash to pull in fixes for the following ops issues:
* Installing of Jinja2 text-file templates for emails
* Logging out unhandled exceptions as errors for easier debugging
| Frederick Muriuki Muriithi |
| 2024-08-07 | Production release...* GN2: 0998033d0a7ea26ed96b00a360a334bae6de8c55
* GN3: efa965c34db3662762dde8ecf376cce561d85453
* GN-AUTH: eb05221f57ec4b6a5537ac7661811ba33b4b0385
| Frederick Muriuki Muriithi |
| 2024-08-02 | rshiny: refactor import code into define-module form | jgart |
| 2024-08-02 | rshiny: add logging for applications | jgart |
| 2024-07-31 | genecup: disable debug mode in flask application for production | jgart |
| 2024-07-31 | mouse-longevity-app: extract the pubmed archive in the package | jgart |
| 2024-07-31 | gn: Add mouse-longevity-app....* gn/packages/mouse-longevity.scm (mouse-longevity-app): New variable.
| jgart |
| 2024-07-31 | genecup: update url | jgart |
