diff options
Diffstat (limited to 'htslib-add-cram_to_bam.patch')
| -rw-r--r-- | htslib-add-cram_to_bam.patch | 27 |
1 files changed, 0 insertions, 27 deletions
diff --git a/htslib-add-cram_to_bam.patch b/htslib-add-cram_to_bam.patch deleted file mode 100644 index c90f7aa..0000000 --- a/htslib-add-cram_to_bam.patch +++ /dev/null @@ -1,27 +0,0 @@ -This patch adds the cram_to_bam function to the public interface of htslib, -because it is used by code in Sambamba. - -by Roel Janssen <roel@gnu.org> ---- a/cram/cram_decode.c 2015-12-15 17:34:33.000000000 +0100 -+++ b/cram/cram_decode.c 2016-02-24 11:16:10.491808702 +0100 -@@ -2730,7 +2730,7 @@ - * Returns the used size of the bam record on success - * -1 on failure. - */ --static int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s, -+int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s, - cram_record *cr, int rec, bam_seq_t **bam) { - int bam_idx, rg_len; - char name_a[1024], *name; -diff -Naur htslib-1.3/cram/cram_decode.h htslib-1.3-patched/cram/cram_decode.h ---- a/cram/cram_decode.h 2015-12-15 17:34:33.000000000 +0100 -+++ b/cram/cram_decode.h 2016-02-24 11:15:04.556809864 +0100 -@@ -104,6 +104,8 @@ - int cram_decode_slice(cram_fd *fd, cram_container *c, cram_slice *s, - SAM_hdr *hdr); - -+int cram_to_bam(SAM_hdr *bfd, cram_fd *fd, cram_slice *s, -+ cram_record *cr, int rec, bam_seq_t **bam); - - #ifdef __cplusplus - } |