diff options
Diffstat (limited to 'gn/packages')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 22 | ||||
| -rw-r--r-- | gn/packages/crates-io.scm | 4 |
2 files changed, 7 insertions, 19 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index db420b7..63934fc 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -469,7 +469,7 @@ reads.") (define-public gfaffix (package (name "gfaffix") - (version "0.1.3") + (version "0.1.5") (source (origin (method git-fetch) @@ -478,12 +478,7 @@ reads.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1biss5qv6ag1dfkn1nspwd528hpzgn8i4jydvbv2z7yv7sc685rh")) - (modules '((guix build utils))) - (snippet - '(begin - (substitute* "Cargo.toml" - (("^handlegraph.*") "handlegraph = \"0.7\"\n")))))) + (base32 "181jxl8ldj39jgscyqzhz4l4k5kxj1j9hvzi8dxj59h2zzznb0kb")))) (build-system cargo-build-system) (arguments `(#:install-source? #f @@ -491,19 +486,12 @@ reads.") (("rust-clap" ,rust-clap-3) ("rust-rustc-hash" ,rust-rustc-hash-1) ("rust-regex" ,rust-regex-1) - ("rust-handlegraph" ,rust-handlegraph-0.7) + ("rust-handlegraph" ,rust-handlegraph-0.7.0-alpha.9) ("rust-gfa" ,rust-gfa-0.10) ("rust-quick-csv", rust-quick-csv-0.1) + ("rust-rayon" ,rust-rayon-1) ("rust-log" ,rust-log-0.4) - ("rust-env-logger" ,rust-env-logger-0.7)) - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'adjust-dependency-version - (lambda* (#:key inputs #:allow-other-keys) - (let ((handlebar-version ,(package-version rust-handlegraph-0.7))) - (substitute* "Cargo.toml" - (("\"0.7\"") - (string-append "{ version = \"" handlebar-version "\" }"))))))))) + ("rust-env-logger" ,rust-env-logger-0.7)))) (home-page "https://github.com/marschall-lab/GFAffix") (synopsis "Identify walk-preserving shared affixes in variation graphs") (description diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 7e74b60..a0e31ce 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -144,7 +144,7 @@ functions} for a collection of hashable objects.") "Library for working with graphs in the GFA (Graphical Fragment Assembly) format") (license license:expat))) -(define-public rust-handlegraph-0.7 +(define-public rust-handlegraph-0.7.0-alpha.9 (package (name "rust-handlegraph") (version "0.7.0-alpha.9") @@ -180,7 +180,7 @@ functions} for a collection of hashable objects.") (define-public rust-handlegraph-0.3 (package - (inherit rust-handlegraph-0.7) + (inherit rust-handlegraph-0.7.0-alpha.9) (name "rust-handlegraph") (version "0.3.0") (source (origin |