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-rw-r--r--gn/packages/genenetwork.scm12
1 files changed, 2 insertions, 10 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 4c2854f..4711fbc 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -290,7 +290,6 @@ implemented, light on server resource usage, and fairly speedy.")
(method git-fetch)
(uri (git-reference
(url "https://pjotrp@gitlab.com/genenetwork/gn2_diet.git")
- ;; (url "https://github.com/genenetwork/genenetwork2_diet.git")
(commit commit)))
(file-name (string-append name "-" version))
(sha256
@@ -580,16 +579,9 @@ implemented, light on server resource usage, and fairly speedy.")
#t)))
(add-before 'install 'fix-paths
(lambda* (#:key inputs #:allow-other-keys)
- (let* (
- ; (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2"))
- ; (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
- (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2"))
- (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
- )
-
+ (let* ((plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2"))
+ (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")))
(substitute* '("etc/default_settings.py")
- ; (("^GENENETWORK_FILES +=.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" ))
- ; (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" ))
(("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" ))
(("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" ))
)