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Diffstat (limited to 'gn/packages/mouse-longevity.scm')
| -rw-r--r-- | gn/packages/mouse-longevity.scm | 87 |
1 files changed, 0 insertions, 87 deletions
diff --git a/gn/packages/mouse-longevity.scm b/gn/packages/mouse-longevity.scm deleted file mode 100644 index f11a7b9..0000000 --- a/gn/packages/mouse-longevity.scm +++ /dev/null @@ -1,87 +0,0 @@ -;;; guix-bioinformatics --- Bioinformatics packages for GNU Guix -;;; Copyright © 2024 jgart <jgart@dismail.de> -;;; -;;; This file is part of guix-bioinformatics. -;;; -;;; genenetwork-machines is free software: you can redistribute it -;;; and/or modify it under the terms of the GNU General Public License -;;; as published by the Free Software Foundation, either version 3 of -;;; the License, or (at your option) any later version. -;;; -;;; genenetwork-machines is distributed in the hope that it will be -;;; useful, but WITHOUT ANY WARRANTY; without even the implied -;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. -;;; See the GNU General Public License for more details. -;;; -;;; You should have received a copy of the GNU General Public License -;;; along with genenetwork-machines. If not, see -;;; <https://www.gnu.org/licenses/>. - -(define-module (gn packages mouse-longevity) - #:use-module (guix) - #:use-module (gnu) - #:use-module (gnu services shepherd) - #:use-module (gn services rshiny) - #:use-module (guix git-download) - #:use-module (guix modules) - #:use-module (guix records) - #:use-module (srfi srfi-1) - #:use-module (ice-9 match) - #:use-module (gnu packages cran) - #:use-module (gnu packages statistics) - #:use-module ((guix licenses) #:prefix license:) - #:use-module (guix build-system trivial) - #:use-module ((gnu packages admin) #:select (shepherd)) - #:use-module ((gnu packages web) #:select (nginx))) - -(define-public mouse-longevity-app - (let ((commit "8a7fdd353e1babcdc3c0453bdfba2aa0dead7c3f") - (revision "2")) - (package - (name "mouse-longevity-app") - (version (git-version "0.0.0" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://git.genenetwork.org/mouse-longevity-app/") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1bmiq9xmsq8wgxv3nqg3r2j1kwy2m6pw8agapj31agbyw81agyna")))) - (build-system trivial-build-system) - (arguments - (list #:modules '((guix build utils)) - #:builder - #~(begin - (use-modules (guix build utils)) - (let* ((source (assoc-ref %build-inputs "source")) - (targetdir (string-append #$output "/share/" #$name)) - (app (string-append #$output "/bin/" #$name)) - (Rbin (search-input-file %build-inputs "/bin/Rscript"))) - (copy-recursively source targetdir) - (mkdir-p (string-append #$output "/bin")) - (call-with-output-file app - (lambda (port) - (format port - "#!~a -library(shiny) -setwd(\"~a\") -runApp(launch.browser=0, port=3979)~%\n" - Rbin targetdir))) - (chmod app #o555))))) - (propagated-inputs - (list r - r-ggplot2 - r-dplyr - r-plotly - r-shinydashboard - ;; TODO: https://ci.genenetwork.org/jobs/genenetwork3/581 - ;; r-shinydashboardplus - r-shinyjs - r-shiny)) - (home-page "https://github.com/Dashbrook/Mouse_Longevity_app/") - (synopsis "R shiny app to visualize mouse lifespan data") - (description - "This package provides an R shiny app to visualize mouse strain -longevity data.") - (license license:gpl3+)))) |