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Diffstat (limited to 'gn/packages/hyphy.scm')
| -rw-r--r-- | gn/packages/hyphy.scm | 71 |
1 files changed, 0 insertions, 71 deletions
diff --git a/gn/packages/hyphy.scm b/gn/packages/hyphy.scm deleted file mode 100644 index d0e9127..0000000 --- a/gn/packages/hyphy.scm +++ /dev/null @@ -1,71 +0,0 @@ -;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com> -;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> -;;; -;;; This file is part of GNU Guix. -;;; -;;; GNU Guix is free software; you can redistribute it and/or modify it -;;; under the terms of the GNU General Public License as published by -;;; the Free Software Foundation; either version 3 of the License, or (at -;;; your option) any later version. -;;; -;;; GNU Guix is distributed in the hope that it will be useful, but -;;; WITHOUT ANY WARRANTY; without even the implied warranty of -;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -;;; GNU General Public License for more details. -;;; -;;; You should have received a copy of the GNU General Public License -;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. - -(define-module (gn packages hyphy) - #:use-module ((guix licenses) #:prefix license:) - #:use-module (guix git-download) - #:use-module (guix build-system cmake) - #:use-module (guix packages) - #:use-module (gnu packages algebra) - #:use-module (gnu packages curl) - #:use-module (gnu packages mpi) - #:use-module (gnu packages python) - #:use-module (gnu packages tls)) - -;; TODO: Unbundle sqlite, gtest -(define-public hyphy ; guix: check - (package - (name "hyphy") - (version "2.5.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/veg/hyphy.git") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1fvmwg2rxkz3abhhldiir69vmyc4i85vdvy64bizgxd0g2k2bikm")))) - (inputs - `(("curl" ,curl) - ("fftw-openmpi" ,fftw-openmpi) - ("openmpi" ,openmpi) - ("openssl" ,openssl) - ("python" ,python-2))) - (build-system cmake-build-system) - (arguments - '(#:make-flags '("MPI") ; Add "GTEST" for tests, currently fails to compile. - #:configure-flags (list "-DCMAKE_BUILD_TYPE=Release" - (string-append "-DINSTALL_PREFIX=" - (assoc-ref %outputs "out"))) - #:tests? #f - #:test-target "HYPHYGTEST")) - (synopsis "hyphy: an open-source software package for the analysis -of genetic sequences using techniques in phylogenetics, molecular -evolution, and machine learning.") - (description "HyPhy is an open-source software package for the -analysis of genetic sequences using techniques in phylogenetics, -molecular evolution, and machine learning. It features a complete -graphical user interface (GUI) and a rich scripting language for -limitless customization of analyses. Additionally, HyPhy features -support for parallel computing environments (via message passing -interface (MPI)) and it can be compiled as a shared library and called -from other programming environments such as Python and R. ") - (home-page "http://hyphy.org") - (license license:expat))) |