diff options
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index e2b0335..e268696 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -18,6 +18,7 @@ #:use-module (guix packages) #:use-module (gnu packages) #:use-module (gnu packages base) + #:use-module (gnu packages certs) #:use-module (gnu packages bioconductor) #:use-module (gnu packages bioinformatics) #:use-module (gnu packages check) @@ -113,7 +114,7 @@ ((#:tests? _ #f) #f))))) (define-public genenetwork3 - (let ((commit "6e86be5910d01b8d682e217c0e53e49cf709a237") + (let ((commit "5ea318ef0dc5e0e54801d5d27aa9d55c168cabb0") (revision "5")) (package (name "genenetwork3") @@ -127,7 +128,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "1smgjxn7bknmx2crxs1q4l0gm3bm0vkahpkz7vhn6fjaxmrsniia")))) + "14b8jzmwbjjrkhh6ajvp6xc7c8fsl918swjj7j6imy2pv7d9dcb3")))) (inputs (list python-click)) (native-inputs @@ -138,6 +139,7 @@ (propagated-inputs (list csvdiff diffutils + nss-certs gemma-wrapper gn-rust-correlation python-argon2-cffi @@ -168,6 +170,7 @@ r-ctl r-optparse r-qtl + r-qtl2 r-rjson r-stringi r-wgcna @@ -186,7 +189,7 @@ (license license:agpl3+)))) (define-public genenetwork2 - (let ((commit "ae572dfe805defc4d40d173325178f5b08c080bf") + (let ((commit "32140f60183c008830294a9fd2f4a0477b29f3b7") (revision "4")) (package (name "genenetwork2") @@ -199,12 +202,13 @@ (file-name (string-append name "-" version)) (sha256 (base32 - "0d93p4wpc5icikq395975y4bcw95j17x5m5f91r4gxrf8v79s0kb")))) + "15vfwjq0y8g0kyk2qfsdisxw1k747mnbmskfisyvdgzjw5hlg184")))) (native-inputs (list graphviz)) (propagated-inputs (list genenetwork3 coreutils + nss-certs gemma gemma-wrapper git @@ -459,6 +463,7 @@ python-hypothesis)) (propagated-inputs (list gunicorn + nss-certs python-redis python-flask python-pyyaml @@ -479,7 +484,7 @@ (license license:agpl3+)))) (define-public gn-auth - (let ((commit "12edc160df0ead9ac1ae4e62a44d49582e063021") + (let ((commit "4c21d0e43cf0de1084d0e0a243e441c6e72236eb") (revision "01")) (package (name "gn-auth") @@ -493,7 +498,7 @@ (hash (content-hash (base32 - "11kixqv3rwfaad43bcqyh085gb0jfcpvzrlx66grkk73cqydgyzl"))))) + "0z9qpgn0j9idzi975ykh04bq2r4pz5d0pppk2zvxiyhxxgxjydrx"))))) (build-system python-build-system) (arguments (list @@ -512,6 +517,7 @@ python-pytest-mock)) (propagated-inputs (list gunicorn + nss-certs python-blinker python-argon2-cffi python-authlib |