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| -rw-r--r-- | gn/packages/guile.scm | 165 |
1 files changed, 165 insertions, 0 deletions
diff --git a/gn/packages/guile.scm b/gn/packages/guile.scm new file mode 100644 index 0000000..6f0b41d --- /dev/null +++ b/gn/packages/guile.scm @@ -0,0 +1,165 @@ +(define-module (gn packages guile) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix gexp) + #:use-module (guix packages) + #:use-module (guix git-download) + #:use-module (guix build-system guile) + #:use-module (guix build-system gnu) + #:use-module ((gnu packages autotools) #:select (libltdl autoconf automake libtool)) + #:use-module ((gnu packages databases) #:select (mariadb)) + #:use-module ((gnu packages compression) #:select (zlib)) + #:use-module ((gnu packages perl) #:select (perl)) + #:use-module ((gnu packages texinfo) #:select (texinfo)) + #:use-module (guix utils) + #:use-module (gnu packages build-tools) + #:use-module (gnu packages package-management) + #:use-module ((gnu packages bash) #:select (bash-minimal)) + #:use-module ((gnu packages bioinformatics) #:select (gemma)) + #:use-module ((gnu packages certs) #:select (nss-certs)) + #:use-module ((gnu packages guile) #:select (guile-json-4 guile-3.0 guile-2.2 guile-readline)) + #:use-module ((gnu packages guile-xyz) #:select (guile-dbi guile-dbd-mysql guile-fibers guile-redis guile-hashing guile-commonmark)) + #:use-module ((gnu packages parallel) #:select (parallel)) + #:use-module ((gnu packages perl) #:select (perl)) + #:use-module ((gnu packages tls) #:select (guile-gnutls openssl))) + +;; Lifted from: +;; https://lists.gnu.org/archive/html/artanis/2023-03/txtNk7zz7rJAN.txt +(define-public guile3-dbi + (package + (name "guile3-dbi") + (version "2.1.8") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/opencog/guile-dbi") + (commit (string-append "guile-dbi-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "123m4j82bi60s1v95pjh4djb7bh6zdwmljbpyg7zq8ni2gyal7lw")))) + (build-system gnu-build-system) + (arguments + `(#:modules (((guix build guile-build-system) + #:select (target-guile-effective-version)) + ,@%default-gnu-imported-modules) + #:imported-modules ((guix build guile-build-system) + ,@%default-gnu-imported-modules) + #:configure-flags + (list (string-append + "--with-guile-site-dir=" %output "/share/guile/site/" + (target-guile-effective-version (assoc-ref %build-inputs "guile")))) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'chdir + (lambda _ + ;; The upstream Git repository contains all the code, so change + ;; to the directory specific to guile-dbi. + (chdir "guile-dbi"))) + (add-after 'install 'patch-extension-path + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (dbi.scm (string-append out "/share/guile/site/" + (target-guile-effective-version + (assoc-ref inputs "guile")) + "/dbi/dbi.scm")) + (ext (string-append out "/lib/libguile-dbi"))) + (substitute* dbi.scm (("libguile-dbi") ext)))))))) + (inputs + (list libltdl)) + (native-inputs + (list autoconf automake libtool perl texinfo guile-3.0)) + (synopsis "Guile database abstraction layer") + (home-page "https://github.com/opencog/guile-dbi") + (description + "guile-dbi is a library for Guile that provides a convenient interface to +SQL databases. Database programming with guile-dbi is generic in that the same +programming interface is presented regardless of which database system is used. +It currently supports MySQL, Postgres and SQLite3.") + (license license:gpl2+) + (native-search-paths + (list (search-path-specification + (variable "GUILE_DBD_PATH") + (files '("lib"))))))) + +(define-public guile3-dbd-mysql + (package + (inherit guile3-dbi) + (name "guile3-dbd-mysql") + (arguments + (substitute-keyword-arguments (package-arguments guile3-dbi) + ((#:phases phases) + `(modify-phases ,phases + (replace 'chdir + (lambda _ + ;; The upstream Git repository contains all the code, so change + ;; to the directory specific to guile-dbd-mysql. + (chdir "guile-dbd-mysql"))) + (add-after 'chdir 'patch-src + (lambda _ + (substitute* "configure.ac" + (("mariadbclient") "mariadb")) + (substitute* "src/guile-dbd-mysql.c" + (("<mariadb/") "<mysql/")))) + (delete 'patch-extension-path))))) + (inputs + (modify-inputs (package-inputs guile3-dbi) + (prepend `(,mariadb "dev") + `(,mariadb "lib") + zlib))) + (native-inputs + (modify-inputs (package-native-inputs guile3-dbi) + (prepend guile3-dbi ; only required for headers + ))) + (synopsis "Guile DBI driver for MySQL") + (description "@code{guile-dbi} is a library for Guile that provides a +convenient interface to SQL databases. This package implements the interface +for MySQL.") + (license license:gpl2+))) + +(define-public gn-guile + (let ((commit "4623225b0adb0846a4c2e879a33b31884d2e5f05") + (revision "0")) + (package + (name "gn-guile") + (version (git-version "4.0.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.genenetwork.org/gn-guile/") + (commit commit))) + (file-name (string-append name "-" version)) + (sha256 + (base32 "1l8q2yi8dqjglv54v2d6yqd498yabhhz193i25kwxwsk6cv9xkyz")))) + (build-system guile-build-system) + (propagated-inputs + (list guile-3.0 guile3-dbi guile3-dbd-mysql guile-fibers guile-gnutls guile-readline + guile-commonmark guile-redis openssl nss-certs gemma parallel guile-hashing + guile-json-4)) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + ;; When using the guile-build-system, guild doesn't + ;; correctly set the GUILE_LOAD_PATH for the various guile + ;; packages in the build phase leading to build failures. + (add-before 'build 'augment-GUILE_LOAD_PATH + (lambda* (#:key outputs #:allow-other-keys) + (let* ((guile-version (target-guile-effective-version))) + ;; guild uses this: "\\.(scm|sls)$" regexp to try and + ;; compile all scm files in this repository. We don't + ;; need to compile guix.scm and manifest.scm. + (delete-file "guix.scm") + (delete-file "manifest.scm") + (setenv "GUILE_LOAD_PATH" + (string-append + (format + #f "~{~a:~}" + (map (lambda (package) + (format #f "~a/share/guile/site/~a" + package guile-version)) + (list #$guile3-dbi #$guile-fibers #$guile-commonmark #$guile-json-4 #$guile-hashing))) + #$(getenv "GUILE_LOAD_PATH"))))))))) + (home-page "https://git.genenetwork.com/gn-guile") + (synopsis "Next generation GN code in guile") + (description "Use of guile.") + (license license:gpl3)))) |