diff options
| -rw-r--r-- | gn/packages/cwl.scm | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index a327187..96dad02 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -4,7 +4,8 @@ #:use-module (guix packages) #:use-module (guix build-system python) #:use-module (gnu packages) - #:use-module (gnu packages bioinformatics)) + #:use-module (gnu packages bioinformatics) + #:use-module (gnu packages node) (define-public cwl-runner @@ -28,3 +29,15 @@ "Common workflow language alternate entry point to allow cwl-runner script as an implementation-agnostic script interpreter.") (license license:asl2.0))) + +;; python-toil tightly integrates with cwltool using it as a library. So, +;; create a library version of cwltool where inputs become propagated inputs. +(define-public python-cwltool + (package + (inherit cwltool) + (name "python-cwltool") + (inputs + (list node)) + (propagated-inputs + (modify-inputs (package-inputs cwltool) + (delete "node"))))) |