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authorpjotr2026-05-24 09:37:14 +0000
committerpjotr2026-05-29 08:59:13 +0000
commit7069ddc63d1b462fbdb994055dd0006a4f4bc17b (patch)
tree8dbab6a9b59c56060757f6d8ce3267ec461c703a /gnu
parent2554e69813dd9ad06b2014913e15608be9d88e3d (diff)
downloadguix-bioinformatics-7069ddc63d1b462fbdb994055dd0006a4f4bc17b.tar.gz
Summary of the refactor:
  - scripts/lib-pangenome-pack.sh — shared (sourced): resolves versions, builds the pack, writes md5sum.txt and the Markdown inventory. Exposes
   pangenome_pack <fmt> <ext> <label> and pangenome_write_outputs.
  - scripts/create-singularity-pangenome-tools.sh — 22 lines: sources the lib, calls pangenome_pack squashfs gz.squashfs singularity.
  - scripts/create-docker-pangenome-tools.sh — 24 lines: sources the lib, calls pangenome_pack docker tar.gz docker.

  md5sum.txt deduplicates by filename across runs and sorts by filename, so running both scripts produces a single combined manifest. The
  inventory .md is identical content for both formats and names by <GBHASH>-<DATE> (no per-image hash, since contents are the same).
Diffstat (limited to 'gnu')
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