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| author | Shepherd on Tux02 | 2024-06-20 07:26:21 -0500 |
|---|---|---|
| committer | Shepherd on Tux02 | 2024-06-20 07:26:21 -0500 |
| commit | f0f8dc84eca7088177797f84db05314537615c77 (patch) | |
| tree | 5a7408a19c92b0c4d536916269425d883c4f06ca /gn/past/genenetwork1.scm | |
| parent | 951e77b10c84889f29c1f2322087c796cedb375a (diff) | |
| parent | 48af9393cf186230e08b0fa6f7f443bc818408d2 (diff) | |
| download | guix-bioinformatics-f0f8dc84eca7088177797f84db05314537615c77.tar.gz | |
Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformatics
Diffstat (limited to 'gn/past/genenetwork1.scm')
| -rw-r--r-- | gn/past/genenetwork1.scm | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/gn/past/genenetwork1.scm b/gn/past/genenetwork1.scm index c557ee7..717aff6 100644 --- a/gn/past/genenetwork1.scm +++ b/gn/past/genenetwork1.scm @@ -44,7 +44,6 @@ #:use-module (past packages python) #:use-module (past packages web) #:use-module (gn packages bioinformatics) - #:use-module (gn packages twint) #:use-module (gn packages databases) #:use-module (gn packages elixir) #:use-module (gn packages gemma) @@ -110,15 +109,22 @@ location of a putative QTL.") `(#:python ,python-2.4 #:phases (modify-phases %standard-phases + (replace 'add-install-to-pythonpath + (lambda* (#:key inputs outputs #:allow-other-keys) + (setenv "PYTHONPATH" + (string-append (site-packages inputs outputs) ":" + (getenv "PYTHONPATH"))))) + (delete 'sanity-check) ; Not applicable to python-2.4 (add-after 'unpack 'make-max-markername-size-larger (lambda _ (substitute* "Src/dataset.c" - (("512") "2048")) - #t)) + (("512") "2048")))) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (invoke "python" "test/runtest.py")))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (setenv "PYTHONPATH" (string-append (site-packages inputs outputs) ":" + (getenv "PYTHONPATH"))) + (invoke "python" "test/runtest.py"))))))) (native-inputs `(("python24-setuptools" ,python24-setuptools))) (home-page "http://qtlreaper.sourceforge.net/") |