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| author | Efraim Flashner | 2022-12-11 15:03:42 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2022-12-11 15:06:07 +0200 |
| commit | ddb46629ba825ff4501528cfa1de07cb077ea6d3 (patch) | |
| tree | 0f4cea04347f1e810131f829dde29612055bed3c /gn/past/genenetwork1.scm | |
| parent | 4a94d82150bae9ca7a9f3926125b6a1974b229d0 (diff) | |
| download | guix-bioinformatics-ddb46629ba825ff4501528cfa1de07cb077ea6d3.tar.gz | |
gn: Fix building genenetwork1
Diffstat (limited to 'gn/past/genenetwork1.scm')
| -rw-r--r-- | gn/past/genenetwork1.scm | 17 |
1 files changed, 12 insertions, 5 deletions
diff --git a/gn/past/genenetwork1.scm b/gn/past/genenetwork1.scm index c557ee7..c629c7e 100644 --- a/gn/past/genenetwork1.scm +++ b/gn/past/genenetwork1.scm @@ -110,15 +110,22 @@ location of a putative QTL.") `(#:python ,python-2.4 #:phases (modify-phases %standard-phases + (replace 'add-install-to-pythonpath + (lambda* (#:key inputs outputs #:allow-other-keys) + (setenv "PYTHONPATH" + (string-append (site-packages inputs outputs) ":" + (getenv "PYTHONPATH"))))) + (delete 'sanity-check) ; Not applicable to python-2.4 (add-after 'unpack 'make-max-markername-size-larger (lambda _ (substitute* "Src/dataset.c" - (("512") "2048")) - #t)) + (("512") "2048")))) (replace 'check - (lambda* (#:key inputs outputs #:allow-other-keys) - (add-installed-pythonpath inputs outputs) - (invoke "python" "test/runtest.py")))))) + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (setenv "PYTHONPATH" (string-append (site-packages inputs outputs) ":" + (getenv "PYTHONPATH"))) + (invoke "python" "test/runtest.py"))))))) (native-inputs `(("python24-setuptools" ,python24-setuptools))) (home-page "http://qtlreaper.sourceforge.net/") |