diff options
| author | Muriithi Frederick Muriuki | 2017-01-25 13:46:47 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2017-01-25 13:46:47 +0300 |
| commit | 6d6dad1be767c46bb5be805eaa1f09e42d029e07 (patch) | |
| tree | c00b5e4542f6138c90fb2995577c430b45cbfdc5 /gn/packages/statistics.scm | |
| parent | 55b43eb79fca5b83d4adfab9b1fbdf309bbf72db (diff) | |
| parent | 77990bdcb4a85ed044dd5dd9bf49f2515b9ce742 (diff) | |
| download | guix-bioinformatics-6d6dad1be767c46bb5be805eaa1f09e42d029e07.tar.gz | |
Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics
Conflicts:
gn/packages/ldc.scm
Diffstat (limited to 'gn/packages/statistics.scm')
| -rw-r--r-- | gn/packages/statistics.scm | 28 |
1 files changed, 27 insertions, 1 deletions
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm index dbe6b99..b83ccf2 100644 --- a/gn/packages/statistics.scm +++ b/gn/packages/statistics.scm @@ -14,6 +14,7 @@ #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages base) + #:use-module (gnu packages bioinformatics) #:use-module (gnu packages boost) #:use-module (gnu packages compression) #:use-module (gnu packages cpio) @@ -333,7 +334,7 @@ (uri (git-reference (url "https://github.com/genenetwork/pylmm.git") (commit commit))) - (file-name (string-append name "-" commit)) + (file-name (string-append name "-" commit)) (sha256 (base32 "0wryaadb36i275p9d2i1kzflahvbl9kj5wlk8jlbvjij8gpqg964")))) @@ -362,3 +363,28 @@ (description "Fast and lightweight linear mixed-model (LMM) solver for use in genome-wide association studies (GWAS).") (license license:agpl3+)))) + +(define-public r-ctl + (package + (name "r-ctl") + (version "1.0.0-0") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cran/src/contrib/ctl_" + version ".tar.gz")) + (sha256 + (base32 + "12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j")))) + (build-system r-build-system) + (inputs `( + ("r-qtl" ,r-qtl) + )) + (home-page "https://github.com/DannyArends/CTLmapping") + (synopsis "R package for analysis of genetical genomic data to identify genetic loci associated with correlation changes in quantitative traits (CTL)") + (description "Analysis of experimental crosses to identify genetic +markers associated with correlation changes in quantitative +traits (CTL). The additional correlation information obtained can be +combined with QTL information to perform de novo reconstruction of +interaction networks.") + (license license:gpl3))) |