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| author | Pjotr Prins | 2019-02-17 02:23:14 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2019-02-17 02:23:14 -0600 |
| commit | ebc8b321c367c71f39bf4034caec3bf3341afc5e (patch) | |
| tree | bb114f99caf27b9c0c31b5c4250ed3bfcc58eaac /gn/packages/statistics.scm | |
| parent | 7a5ba50f1df5473bf43abeae34648ee39698a6b1 (diff) | |
| download | guix-bioinformatics-ebc8b321c367c71f39bf4034caec3bf3341afc5e.tar.gz | |
Fix GN2 build - but need to enable RPy2 tests again
Diffstat (limited to 'gn/packages/statistics.scm')
| -rw-r--r-- | gn/packages/statistics.scm | 40 |
1 files changed, 0 insertions, 40 deletions
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm index ee10224..cdabf69 100644 --- a/gn/packages/statistics.scm +++ b/gn/packages/statistics.scm @@ -274,46 +274,6 @@ "Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.") (license license:gpl2+))) -(define-public pylmm-gn2 - (let ((commit "3c6d1cac8")) - (package - (name "pylmm-gn2") - (version (string-append "1.0-" commit )) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/genenetwork/pylmm.git") - (commit commit))) - (file-name (string-append name "-" commit)) - (sha256 - (base32 - "0wryaadb36i275p9d2i1kzflahvbl9kj5wlk8jlbvjij8gpqg964")))) - (build-system python-build-system) - (inputs `( - ("python2-setuptools" ,python2-setuptools) - ("python2-scipy" ,python2-scipy) - ("python2-numpy" ,python2-numpy) - )) - (arguments - `(#:python ,python-2 - #:tests? #f ; no 'setup.py test' - #:phases - (modify-phases %standard-phases - (add-before - 'build 'change-paths - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (substitute* "scripts/pylmm_redis" - (("/usr/bin/python") (which "python")) - (("\\$PACKAGEDIR") (string-append out "/lib/python2.7/site-packages"))) - )))))) - - (home-page "http://genenetwork.org/") - (synopsis "LMM resolver") - (description "Fast and lightweight linear mixed-model (LMM) solver -for use in genome-wide association studies (GWAS).") - (license license:agpl3+)))) - (define-public r-ctl ; guix: ready (package (name "r-ctl") |