From ebc8b321c367c71f39bf4034caec3bf3341afc5e Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sun, 17 Feb 2019 02:23:14 -0600
Subject: Fix GN2 build - but need to enable RPy2 tests again

---
 gn/packages/statistics.scm | 40 ----------------------------------------
 1 file changed, 40 deletions(-)

(limited to 'gn/packages/statistics.scm')

diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm
index ee10224..cdabf69 100644
--- a/gn/packages/statistics.scm
+++ b/gn/packages/statistics.scm
@@ -274,46 +274,6 @@
     "Data and Functions from the book R Graphics, Second Edition.  There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.")
   (license license:gpl2+)))
 
-(define-public pylmm-gn2
-  (let ((commit "3c6d1cac8"))
-  (package
-    (name "pylmm-gn2")
-    (version (string-append "1.0-" commit ))
-    (source (origin
-             (method git-fetch)
-             (uri (git-reference
-                   (url "https://github.com/genenetwork/pylmm.git")
-                   (commit commit)))
-             (file-name (string-append name "-" commit))
-             (sha256
-              (base32
-               "0wryaadb36i275p9d2i1kzflahvbl9kj5wlk8jlbvjij8gpqg964"))))
-    (build-system python-build-system)
-    (inputs `(
-              ("python2-setuptools" ,python2-setuptools)
-              ("python2-scipy" ,python2-scipy)
-              ("python2-numpy" ,python2-numpy)
-              ))
-    (arguments
-     `(#:python ,python-2
-       #:tests? #f        ; no 'setup.py test'
-       #:phases
-       (modify-phases %standard-phases
-         (add-before
-          'build 'change-paths
-          (lambda* (#:key outputs #:allow-other-keys)
-                   (let ((out (assoc-ref outputs "out")))
-                     (substitute* "scripts/pylmm_redis"
-                                  (("/usr/bin/python") (which "python"))
-                                  (("\\$PACKAGEDIR") (string-append out "/lib/python2.7/site-packages")))
-                     ))))))
-
-    (home-page "http://genenetwork.org/")
-    (synopsis "LMM resolver")
-    (description "Fast and lightweight linear mixed-model (LMM) solver
-for use in genome-wide association studies (GWAS).")
-    (license license:agpl3+))))
-
 (define-public r-ctl ; guix: ready
  (package
   (name "r-ctl")
-- 
cgit v1.2.3