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authorShepherd on Tux022024-06-20 07:26:21 -0500
committerShepherd on Tux022024-06-20 07:26:21 -0500
commitf0f8dc84eca7088177797f84db05314537615c77 (patch)
tree5a7408a19c92b0c4d536916269425d883c4f06ca /gn/packages/ratspub.scm
parent951e77b10c84889f29c1f2322087c796cedb375a (diff)
parent48af9393cf186230e08b0fa6f7f443bc818408d2 (diff)
downloadguix-bioinformatics-f0f8dc84eca7088177797f84db05314537615c77.tar.gz
Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformatics
Diffstat (limited to 'gn/packages/ratspub.scm')
-rw-r--r--gn/packages/ratspub.scm16
1 files changed, 12 insertions, 4 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm
index 5f6f7b5..726bc0b 100644
--- a/gn/packages/ratspub.scm
+++ b/gn/packages/ratspub.scm
@@ -17,6 +17,7 @@
#:use-module (gnu packages python-xyz)
#:use-module (gn packages javascript)
#:use-module (gn packages machine-learning)
+ #:use-module (gn packages python)
#:use-module (gn packages web))
(define-public ratspub
@@ -148,6 +149,13 @@ Association Studies}} catalog are also included in the search. These
gene-keyword relationships are presented as an interactive graph and a table.")
(license license:expat)))
+(define use-corrected-inputs
+ (package-input-rewriting/spec
+ ;; Tensorflow-native provides much improved speeds. python-h5py@2 provides
+ ;; compatibility with our version of tensorflow.
+ `(("tensorflow" . ,(const tensorflow-native))
+ ("python-h5py" . ,(const python-h5py-2)))))
+
(define-public ratspub-with-tensorflow-native
(package
(inherit
@@ -262,7 +270,7 @@ if __name__ == '__main__':
(define-public genecup
(package
(name "genecup")
- (version "1.6")
+ (version "1.8")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -270,7 +278,7 @@ if __name__ == '__main__':
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "050yg4hvjs9rghw41q35xdd2c2rzh9sl4sfwkk3am150mgf2p0nh"))))
+ (base32 "0clnlnj6cl816yj3nalh1h6hsvnh3sjq2g84x1kmj1zkqkw184ri"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; no test suite
@@ -399,11 +407,11 @@ concepts and a list of keywords for each concept.")
(define-public genecup-with-tensorflow-native
(package
(inherit
- (tensowflow-native-instead-of-tensorflow genecup))
+ (use-corrected-inputs genecup))
(name "genecup-with-tensorflow-native")))
(define-public genecup-latest-with-tensorflow-native
(package
(inherit
- (tensowflow-native-instead-of-tensorflow genecup-master))
+ (use-corrected-inputs genecup-master))
(name "genecup-latest-with-tensorflow-native")))