diff options
author | Efraim Flashner | 2022-09-04 15:14:15 +0300 |
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committer | Efraim Flashner | 2022-09-20 14:20:48 +0300 |
commit | c76d239f93e5bef315a719b3eee3cef5452e6bda (patch) | |
tree | 3c257dd2b5bf2fe52ba96b44d2bec1d19476881c /gn/packages/ratspub.scm | |
parent | 66c88ccd07c303af60494b110067ab0e5636931a (diff) | |
download | guix-bioinformatics-c76d239f93e5bef315a719b3eee3cef5452e6bda.tar.gz |
genecup: Update package.
Replace PYTHONPATH with GUIX_PYTHONPATH.
Remove trailing #t from phases.
Diffstat (limited to 'gn/packages/ratspub.scm')
-rw-r--r-- | gn/packages/ratspub.scm | 54 |
1 files changed, 19 insertions, 35 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm index f298716..5f6f7b5 100644 --- a/gn/packages/ratspub.scm +++ b/gn/packages/ratspub.scm @@ -33,8 +33,7 @@ (modules '((guix build utils))) (snippet '(begin (substitute* "server.py" - (("4201") "4200")) - #t)) + (("4201") "4200")))) (sha256 (base32 "1y89rkqdxcnl2jjsy1wfp9p8qkgh6nzqs1r37wyhc8y7r3dva7kf")))) @@ -51,8 +50,7 @@ (add-after 'unpack 'patch-datadir (lambda _ (substitute* "server.py" - (("^datadir.*") "datadir = \"/export/ratspub/\"\n")) - #t)) + (("^datadir.*") "datadir = \"/export/ratspub/\"\n")))) (add-after 'unpack 'patch-sources (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -71,13 +69,11 @@ (("https.*jquery-3.2.1.slim.min.js.*\\\">") "/static/jquery.slim.min.js\">") (("https.*1.12.9/umd/popper.min.js.*\\\">") "/static/popper.min.js\">")) (substitute* "ratspub.py" - (("hostname") (string-append inetutils "/bin/hostname")))) - #t)) + (("hostname") (string-append inetutils "/bin/hostname")))))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) - (copy-recursively "." out)) - #t)) + (copy-recursively "." out)))) (add-after 'install 'install-javascript (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -111,19 +107,17 @@ (string-append out "/static/FileSaver.js")) (symlink (string-append js-popper "/share/javascript/popper.min.js") - (string-append out "/static/popper.min.js"))) - #t)) + (string-append out "/static/popper.min.js"))))) (add-after 'install 'wrap-executable (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) - (path (getenv "PYTHONPATH"))) + (path (getenv "GUIX_PYTHONPATH"))) (wrap-program (string-append out "/server.py") `("PATH" ":" prefix (,(dirname (which "edirect.pl")) ,(dirname (which "dirname")) ,(dirname (which "grep")) ,(dirname (which "sed")))) - `("PYTHONPATH" ":" prefix (,path)))) - #t))))) + `("GUIX_PYTHONPATH" ":" prefix (,path))))))))) (inputs `(("edirect" ,edirect) ("inetutils" ,inetutils) @@ -208,8 +202,7 @@ gene-keyword relationships are presented as an interactive graph and a table.") "/static/jquery.slim.min.js\"></script>\n") ;(("https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js.*") ; "/static/popper.min.js\"></script>\n") - ) - #t)) + ))) (replace 'install (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -226,8 +219,7 @@ if __name__ == '__main__': app.run(debug=True, port=4222)~%" python))) (chmod "main.py" #o555) - (copy-recursively "." out)) - #t)) + (copy-recursively "." out)))) (add-after 'install 'install-javascript (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -247,15 +239,13 @@ if __name__ == '__main__': ;(symlink (string-append js-popper ; "/share/web/popper/popper.min.js") ; (string-append out "/static/popper.min.js")) - ) - #t)) + ))) (add-after 'install 'wrap-executable (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) - (path (getenv "PYTHONPATH"))) + (path (getenv "GUIX_PYTHONPATH"))) (wrap-program (string-append out "/main.py") - `("PYTHONPATH" ":" prefix (,path)))) - #t))))) + `("GUIX_PYTHONPATH" ":" prefix (,path))))))))) (inputs `(("python" ,python) ("python-flask-sqlalchemy" ,python-flask-sqlalchemy))) @@ -292,16 +282,14 @@ if __name__ == '__main__': (add-after 'unpack 'use-different-port (lambda _ (substitute* "server.py" - (("4200") "4204")) - #t)) + (("4200") "4204")))) (add-after 'unpack 'make-files-writable (lambda _ (for-each make-file-writable (find-files ".")))) (add-after 'unpack 'patch-datadir (lambda _ (substitute* "server.py" - (("^datadir.*") "datadir = \"/export/ratspub/\"\n")) - #t)) + (("^datadir.*") "datadir = \"/export/ratspub/\"\n")))) (add-after 'unpack 'patch-sources (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -320,13 +308,11 @@ if __name__ == '__main__': (("https.*jquery-3.2.1.slim.min.js.*\\\">") "/static/jquery.slim.min.js\">") (("https.*1.12.9/umd/popper.min.js.*\\\">") "/static/popper.min.js\">")) (substitute* "ratspub.py" - (("hostname") (string-append inetutils "/bin/hostname")))) - #t)) + (("hostname") (string-append inetutils "/bin/hostname")))))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) - (copy-recursively "." out)) - #t)) + (copy-recursively "." out)))) (add-after 'install 'install-javascript (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) @@ -360,19 +346,17 @@ if __name__ == '__main__': (string-append out "/static/FileSaver.js")) (symlink (string-append js-popper "/share/javascript/popper.min.js") - (string-append out "/static/popper.min.js"))) - #t)) + (string-append out "/static/popper.min.js"))))) (add-after 'install 'wrap-executable (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) - (path (getenv "PYTHONPATH"))) + (path (getenv "GUIX_PYTHONPATH"))) (wrap-program (string-append out "/server.py") `("PATH" ":" prefix (,(dirname (which "edirect.pl")) ,(dirname (which "dirname")) ,(dirname (which "grep")) ,(dirname (which "sed")))) - `("PYTHONPATH" ":" prefix (,path)))) - #t))))) + `("GUIX_PYTHONPATH" ":" prefix (,path))))))))) (inputs `(("edirect" ,edirect) ("inetutils" ,inetutils) |