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authorEfraim Flashner2020-08-14 05:50:38 -0500
committerEfraim Flashner2020-08-14 05:50:58 -0500
commit9b240e29cd276bd4989a7a20117132df3c290d9c (patch)
tree871c106a2bf95479fb5f0bb79185c9f0c812b686 /gn/packages/ratspub.scm
parentb0c38d151324e37448ade758cc48d02d89f94b60 (diff)
downloadguix-bioinformatics-9b240e29cd276bd4989a7a20117132df3c290d9c.tar.gz
gn: ratspub: Update to 0.4.0.
Diffstat (limited to 'gn/packages/ratspub.scm')
-rw-r--r--gn/packages/ratspub.scm21
1 files changed, 11 insertions, 10 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm
index 6cf4802..912f535 100644
--- a/gn/packages/ratspub.scm
+++ b/gn/packages/ratspub.scm
@@ -19,16 +19,16 @@
(define-public ratspub
(package
(name "ratspub")
- (version "0.3.2")
+ (version "0.4.0")
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/chen42/ratspub.git")
+ (url "https://github.com/chen42/ratspub")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "17phk83n0p21b90c7saqgmclw71ydmq62da33iq67rzv9psxvs2s"))
+ "0hasm6xncqkan9s4sw89s1x9gcybw59fzvpmr7fk1camvij7mywh"))
(modules '((guix build utils)))
(snippet
'(begin (substitute* "server.py"
@@ -130,13 +130,14 @@
(home-page "http://rats.pub/")
(synopsis "Relationship with Addiction Through Searches of PubMed")
(description
- "RatsPub searches PubMed to find sentences that contain the query terms
-(i.e., gene symbols) and drug addiction-related keywords. These gene-keyword
-relationships are presented as an interactive graph that can efficiently answer
-the question \"What do we know about these genes and addiction?\". Data from
-@acronym{EBI GWAS, European Bioinformatics Institute Genome-Wide Association
-Studies} catalog are also included in the search to better answer this
-question.")
+ "RatsPub is a tool to efficiently and comprehensively answer the question
+\"What do we know about these genes and addiction?\". RatsPub answers this
+question by searching PubMed to find sentences containing the query terms (i.e.,
+gene symbols) and over 300 drug addiction-related keywords that are organized
+into six categories. Data from @url{https://www.ebi.ac.uk/gwas/,
+@acronym{NHGRI-EBI GWAS, European Bioinformatics Institute Genome-Wide
+Association Studies}} catalog are also included in the search. These
+gene-keyword relationships are presented as an interactive graph and a table.")
(license license:expat)))
(define-public ratspub-with-tensorflow-native