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| author | Pjotr Prins | 2017-08-22 05:21:51 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2017-08-22 05:21:51 -0500 |
| commit | f643ef8969455a17e382ec4bc8e48e27e5a95957 (patch) | |
| tree | 5d180ca5afdb0596f5ec38ec13a43f12a2b96b28 /gn/packages/genenetwork.scm | |
| parent | e50493dc409464bacaa06775418c32be3f1aacf5 (diff) | |
| download | guix-bioinformatics-f643ef8969455a17e382ec4bc8e48e27e5a95957.tar.gz | |
Updated gemma to latest
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index b55c37f..ea7fcd6 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -44,7 +44,7 @@ #:use-module (gnu packages bootstrap) #:use-module (gnu packages version-control) #:use-module (gn packages bioinformatics) - ; #:use-module (gn packages gemma) + #:use-module (gn packages gemma) #:use-module (gn packages javascript) #:use-module (gn packages phewas) #:use-module (gn packages python) @@ -175,7 +175,7 @@ location of a putative QTL.") ("r-wgcna" ,r-wgcna) ("redis" ,redis) ("mysql" ,mysql) - ("gemma" ,gemma) + ("gemma-git-gn2" ,gemma-git-gn2) ("genenetwork2-files-small" ,genenetwork2-files-small) ("plink-ng" ,plink-ng) ("pylmm-gn2" ,pylmm-gn2) @@ -233,7 +233,7 @@ location of a putative QTL.") (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2")) - (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) + (gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma")) ) (substitute* '("etc/default_settings.py") |