From f643ef8969455a17e382ec4bc8e48e27e5a95957 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Tue, 22 Aug 2017 05:21:51 -0500
Subject: Updated gemma to latest

---
 gn/packages/genenetwork.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

(limited to 'gn/packages/genenetwork.scm')

diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index b55c37f..ea7fcd6 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -44,7 +44,7 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages version-control)
   #:use-module (gn packages bioinformatics)
-  ; #:use-module (gn packages gemma)
+  #:use-module (gn packages gemma)
   #:use-module (gn packages javascript)
   #:use-module (gn packages phewas)
   #:use-module (gn packages python)
@@ -175,7 +175,7 @@ location of a putative QTL.")
               ("r-wgcna" ,r-wgcna)
               ("redis" ,redis)
               ("mysql" ,mysql)
-              ("gemma" ,gemma)
+              ("gemma-git-gn2" ,gemma-git-gn2)
               ("genenetwork2-files-small" ,genenetwork2-files-small)
               ("plink-ng" ,plink-ng)
               ("pylmm-gn2" ,pylmm-gn2)
@@ -233,7 +233,7 @@ location of a putative QTL.")
                              (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
                              (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
                              (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
-                             (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma"))
+                             (gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma"))
                              )
 
                (substitute* '("etc/default_settings.py")
-- 
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