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author | pjotrp | 2016-02-23 09:05:47 +0000 |
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committer | pjotrp | 2016-02-23 09:05:47 +0000 |
commit | 5f0f9e2bc4f10c7219990614f89f79408fcb9f35 (patch) | |
tree | b09eca62cb748588b5273ec6b291d0d60000e6be /gn/packages/genenetwork.scm | |
parent | 520b002306561ed81599ddfed18f9662b99d5846 (diff) | |
download | guix-bioinformatics-gn2.tar.gz |
gn2: added database downloadgn2
Diffstat (limited to 'gn/packages/genenetwork.scm')
-rw-r--r-- | gn/packages/genenetwork.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 2f755a6..1b52a5d 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -202,3 +202,35 @@ ;; ./pre-inst-env guix download http://files.genenetwork.org/raw_database/db_webqtl_s.zip ;; 0sscjh0wml2lx0mb43vf4chg9gpbfi7abpjxb34n3kyny9ll557x + +(define-public genenetwork2-database-small + (let ((md5 "93e745e9c")) + (package + (name "genenetwork2-database-small") + (version "1.0") + (source + (origin + (method url-fetch) + (uri "http://files.genenetwork.org/raw_database/db_webqtl_s.zip") + (file-name (string-append name "-" md5)) + (sha256 + (base32 "0sscjh0wml2lx0mb43vf4chg9gpbfi7abpjxb34n3kyny9ll557x")))) + (build-system trivial-build-system) + (native-inputs `(("unzip" ,unzip) + ("source" ,source))) + + (arguments + `(#:modules ((guix build utils)) + #:builder (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (unzip (string-append (assoc-ref %build-inputs "unzip") "/bin/unzip")) + ) + (and (mkdir "db") + (zero? (system* unzip source "-d" "db")) + (chdir "db")))))) + (home-page "http://genenetwork.org/") + (synopsis "Small database to run on genenetwork") + (description "Genenetwork installation + database.") + (license license:agpl3+)))) + |