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authorShepherd on Tux022024-06-20 08:37:15 -0500
committerShepherd on Tux022024-06-20 08:37:15 -0500
commitfe5fd5cb23907f8e37edafda96bafa608a3e0e7f (patch)
tree0b4cec2038dde07fe26f1c6882369f36a9545a19 /gn/packages/crates-io.scm
parentf0f8dc84eca7088177797f84db05314537615c77 (diff)
parent0362ee068a39ce9a5fd6f0fba9cd5586211f07f1 (diff)
downloadguix-bioinformatics-fe5fd5cb23907f8e37edafda96bafa608a3e0e7f.tar.gz
Merge branch 'master' of /home/git/public/guix-bioinformatics
Diffstat (limited to 'gn/packages/crates-io.scm')
-rw-r--r--gn/packages/crates-io.scm203
1 files changed, 112 insertions, 91 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index e500d86..4cebb33 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -7,9 +7,35 @@
#:use-module (guix build-system cargo)
#:use-module (gnu packages crates-graphics)
#:use-module (gnu packages crates-io)
+ #:use-module (gnu packages crates-windows)
#:use-module (gnu packages maths)
#:use-module (gnu packages python))
+(define-public rust-assert-cmd-0.12
+ (package
+ (name "rust-assert-cmd")
+ (version "0.12.2")
+ (source (origin
+ (method url-fetch)
+ (uri (crate-uri "assert-cmd" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xfn2spazxk3ljj9q3250a24gndja9vwa0h0rnbccdrbd4ncyvwk"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-doc-comment" ,rust-doc-comment-0.3)
+ ("rust-escargot" ,rust-escargot-0.5)
+ ("rust-predicates" ,rust-predicates-1)
+ ("rust-predicates-core" ,rust-predicates-core-1)
+ ("rust-predicates-tree" ,rust-predicates-tree-1)
+ ("rust-wait-timeout" ,rust-wait-timeout-0.2))))
+ (home-page "https://github.com/assert-rs/assert_cmd")
+ (synopsis "Test CLI Applications.")
+ (description "Test CLI Applications.")
+ (license (list license:expat license:asl2.0))))
+
(define-public rust-bgzip-0.2
(package
(name "rust-bgzip")
@@ -66,25 +92,6 @@ for massive key sets}. It generates an @acronym{MPHF, minimal perfect hash
functions} for a collection of hashable objects.")
(license license:expat)))
-(define-public rust-clap-lex-0.3
- (package
- (name "rust-clap-lex")
- (version "0.3.0")
- (source (origin
- (method url-fetch)
- (uri (crate-uri "clap-lex" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1a4dzbnlxiamfsn0pnkhn7n9bdfjh66j9fxm6mmr7d227vvrhh8d"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs (("rust-os-str-bytes" ,rust-os-str-bytes-6))))
- (home-page "https://github.com/clap-rs/clap/tree/master/clap_lex")
- (synopsis "Minimal, flexible command line parser")
- (description "Minimal, flexible command line parser")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-cuckoofilter-0.5
(package
(name "rust-cuckoofilter")
@@ -144,7 +151,7 @@ functions} for a collection of hashable objects.")
"Library for working with graphs in the GFA (Graphical Fragment Assembly) format")
(license license:expat)))
-(define-public rust-handlegraph-0.7
+(define-public rust-handlegraph-0.7.0-alpha.9
(package
(name "rust-handlegraph")
(version "0.7.0-alpha.9")
@@ -180,7 +187,7 @@ functions} for a collection of hashable objects.")
(define-public rust-handlegraph-0.3
(package
- (inherit rust-handlegraph-0.7)
+ (inherit rust-handlegraph-0.7.0-alpha.9)
(name "rust-handlegraph")
(version "0.3.0")
(source (origin
@@ -221,6 +228,64 @@ functions} for a collection of hashable objects.")
(description "Key String provides a Rust package optimized for map keys.")
(license (list license:expat license:asl2.0))))
+(define-public rust-line-drawing-0.8
+ (package
+ (name "rust-line-drawing")
+ (version "0.8.1")
+ (source (origin
+ (method url-fetch)
+ (uri (crate-uri "line-drawing" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "18a940s3mv8w5prpb99sdxykzhrvzrnymw3hvd7wisnkgbr11jqm"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-inputs
+ (("rust-num-traits" ,rust-num-traits-0.2))
+ #:cargo-development-inputs
+ (("rust-bresenham" ,rust-bresenham-0.1)
+ ("rust-image" ,rust-image-0.23)
+ ("rust-rand" ,rust-rand-0.8))))
+ (home-page "https://github.com/expenses/line_drawing")
+ (synopsis
+ "A collection of line-drawing algorithms for use in graphics and video games.")
+ (description
+ "This package provides a collection of line-drawing algorithms for use in
+graphics and video games.")
+ (license license:expat)))
+
+(define-public rust-lodepng-3
+ (package
+ (name "rust-lodepng")
+ (version "3.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (crate-uri "lodepng" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1f5d9bva17sq7npw9qh7h6sh02k0ycrjx5hr147q0jv4m0qd2970"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:cargo-test-flags
+ (list "--release" "--"
+ ;; Not all files included.
+ "--skip=test::read_icc")
+ #:cargo-inputs
+ (("rust-crc32fast" ,rust-crc32fast-1)
+ ("rust-fallible-collections" ,rust-fallible-collections-0.4)
+ ("rust-flate2" ,rust-flate2-1)
+ ("rust-libc" ,rust-libc-0.2)
+ ("rust-rgb" ,rust-rgb-0.8))))
+ (home-page "https://lib.rs/crates/lodepng")
+ (synopsis
+ "Reading and writing PNG files without system dependencies. Pure Rust port of LodePNG.")
+ (description
+ "Reading and writing PNG files without system dependencies. Pure Rust port of
+@code{LodePNG}.")
+ (license license:zlib)))
+
(define-public rust-pyo3-0.14
(package
(name "rust-pyo3")
@@ -475,76 +540,6 @@ or any combination.")
(description "Rust CLI tools for manipulation of Jupyter Notebooks.")
(license #f)))) ; There is no license.
-(define-public rust-clap-4
- (package
- (name "rust-clap")
- (version "4.0.9")
- (source (origin
- (method url-fetch)
- (uri (crate-uri "clap" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1w0dxqzrh449s9l2k8g66pdsff02599bwi5mh0gny3227kcpsq1h"))))
- (build-system cargo-build-system)
- (arguments
- `(#:skip-build? #t ; Not all inputs packaged.
- #:cargo-inputs
- (("rust-atty" ,rust-atty-0.2)
- ("rust-backtrace" ,rust-backtrace-0.3)
- ("rust-bitflags" ,rust-bitflags-1)
- ("rust-clap-derive" ,rust-clap-derive-4)
- ("rust-clap-lex" ,rust-clap-lex-0.3)
- ("rust-once-cell" ,rust-once-cell-1)
- ("rust-strsim" ,rust-strsim-0.10)
- ("rust-termcolor" ,rust-termcolor-1)
- ("rust-terminal-size" ,rust-terminal-size-0.1)
- ("rust-unicase" ,rust-unicase-2)
- ("rust-unicode-width" ,rust-unicode-width-0.1))
- ;#:cargo-development-inputs
- ;(("rust-humantime" ,rust-humantime-2)
- ; ("rust-rustversion" ,rust-rustversion-1)
- ; ("rust-shlex" ,rust-shlex-1)
- ; ("rust-snapbox" ,rust-snapbox-0.4)
- ; ("rust-static-assertions" ,rust-static-assertions-1)
- ; ("rust-trybuild" ,rust-trybuild-1)
- ; ("rust-trycmd" ,rust-trycmd-0.13)
- ; ("rust-unic-emoji-char" ,rust-unic-emoji-char-0.9))
- ))
- (home-page "https://github.com/clap-rs/clap")
- (synopsis
- "A simple to use, efficient, and full-featured Command Line Argument Parser")
- (description
- "This package provides a simple to use, efficient, and full-featured Command Line
- Argument Parser")
- (license (list license:expat license:asl2.0))))
-
-(define-public rust-clap-derive-4
- (package
- (name "rust-clap-derive")
- (version "4.0.9")
- (source (origin
- (method url-fetch)
- (uri (crate-uri "clap-derive" version))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "02zhbbmyz3dpy9ml6xfp7i8p3ffj1djvkdnkg6gr6d0s5r4hg8x4"))))
- (build-system cargo-build-system)
- (arguments
- `(#:cargo-inputs
- (("rust-heck" ,rust-heck-0.4)
- ("rust-proc-macro-error" ,rust-proc-macro-error-1)
- ("rust-proc-macro2" ,rust-proc-macro2-1)
- ("rust-quote" ,rust-quote-1)
- ("rust-syn" ,rust-syn-1))))
- (home-page "https://github.com/clap-rs/clap/tree/master/clap_derive")
- (synopsis
- "Parse command line argument by defining a struct, derive crate.")
- (description
- "Parse command line argument by defining a struct, derive crate.")
- (license (list license:expat license:asl2.0))))
-
(define-public rust-trycmd-0.12
(package
(name "rust-trycmd")
@@ -619,6 +614,32 @@ or any combination.")
(description "Yet another format-preserving TOML parser.")
(license (list license:expat license:asl2.0))))
+(define-public rust-vcf-0.6
+ (package
+ (name "rust-vcf")
+ (version "0.6.1")
+ (source (origin
+ (method url-fetch)
+ (uri (crate-uri "vcf" version))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0dc0p00a19rpmhrqcshrn2qg5l716b5s1fy8vpd3p32bw77vpbs0"))))
+ (build-system cargo-build-system)
+ (arguments
+ `(#:tests? #f ; Not all files included
+ #:cargo-inputs
+ (("rust-nom" ,rust-nom-7)
+ ("rust-once-cell" ,rust-once-cell-1)
+ ("rust-thiserror" ,rust-thiserror-1))
+ #:cargo-development-inputs
+ (("rust-clap" ,rust-clap-2)
+ ("rust-flate2" ,rust-flate2-1))))
+ (home-page "https://github.com/informationsea/vcf-rs")
+ (synopsis "Rust implmentation of VCF parser")
+ (description "This package provides a rust implmentation of a VCF parser.")
+ (license license:asl2.0)))
+
(define-public rust-gsl-sys
(package
(name "rust-gsl-sys")