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| author | pjotrp | 2026-04-04 12:04:04 +0200 |
|---|---|---|
| committer | pjotrp | 2026-04-04 12:04:04 +0200 |
| commit | 755b24063c288255ff3900aaae98d7499d645e65 (patch) | |
| tree | f10f81cc53b2278f7938effd7c27dad7747b9294 /README.org | |
| parent | 638ca7077f72b7f8e8b1bf7ab54cdd8d56200613 (diff) | |
| download | guix-bioinformatics-755b24063c288255ff3900aaae98d7499d645e65.tar.gz | |
Add manifest.scm to build all critical packages
Diffstat (limited to 'README.org')
| -rw-r--r-- | README.org | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/README.org b/README.org index a343b94..6e63108 100644 --- a/README.org +++ b/README.org @@ -3,7 +3,9 @@ IMPORTANT: this repository lives at https://git.genenetwork.org/guix-bioinformatics/! Older packages have been moved to https://git.genenetwork.org/guix-bioinformatics-past/. -Bioinformatics packages for Guix that are used in https://genenetwork.org/ and some other places. +Over 400 bioinformatics packages for Guix that are used in https://genenetwork.org/ and some other places. +Mostly targetting genomics, pangenomics and genetics. + See Guix documentation and [[https://gitlab.com/pjotrp/guix-notes/blob/master/HACKING.org][Guix notes]] for installing and hacking Guix. See [[https://github.com/franzos/awesome-guix][awesome guix]] for a list of other channels. @@ -67,6 +69,12 @@ root with : guix archive --authorize < tux02-guix-substitutions-public-key.txt : guix build -L ~/guix-bioinformatics/ --substitute-urls="https://cuirass.genenetwork.org https://ci.guix.gnu.org https://bordeaux.guix.gnu.org https://guix.genenetwork.org" hello +* Testing the build + +All important packages are listed in manifest.scm. Test with + +: guix build -L . -m manifest.scm + * An important note on AI The packages in guix-bioinformatics channel are generally written with the help of AI. Only the directory ./gnu/packages contains software that was crafted by hand without the help of AI. |
