diff options
| author | pjotrp | 2016-09-30 09:25:11 +0000 |
|---|---|---|
| committer | pjotrp | 2016-09-30 09:25:11 +0000 |
| commit | ead155ea6347141ffb1279aefb35f5faccff5047 (patch) | |
| tree | df2b7a19ed3ff4d32ef1e4624d8cd4fad6ef0da5 | |
| parent | 8ded2a3ba155f70b495ddcf218fe479b5993f5b4 (diff) | |
| download | guix-bioinformatics-gn-staging.tar.gz | |
R-ctl addedgn-staging
| -rw-r--r-- | gn/packages/genenetwork.scm | 1 | ||||
| -rw-r--r-- | gn/packages/statistics.scm | 28 |
2 files changed, 28 insertions, 1 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 63e0fb9..dfbba02 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -192,6 +192,7 @@ location of a putative QTL.") (propagated-inputs `( ;; propagated for development purposes ("python" ,python-2) ;; probably superfluous ("r" ,r) + ("r-ctl" ,r-ctl) ("r-wgcna" ,r-wgcna) ("r-qtl" ,r-qtl) ("redis" ,redis) diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm index dbe6b99..b83ccf2 100644 --- a/gn/packages/statistics.scm +++ b/gn/packages/statistics.scm @@ -14,6 +14,7 @@ #:use-module (gnu packages) #:use-module (gnu packages algebra) #:use-module (gnu packages base) + #:use-module (gnu packages bioinformatics) #:use-module (gnu packages boost) #:use-module (gnu packages compression) #:use-module (gnu packages cpio) @@ -333,7 +334,7 @@ (uri (git-reference (url "https://github.com/genenetwork/pylmm.git") (commit commit))) - (file-name (string-append name "-" commit)) + (file-name (string-append name "-" commit)) (sha256 (base32 "0wryaadb36i275p9d2i1kzflahvbl9kj5wlk8jlbvjij8gpqg964")))) @@ -362,3 +363,28 @@ (description "Fast and lightweight linear mixed-model (LMM) solver for use in genome-wide association studies (GWAS).") (license license:agpl3+)))) + +(define-public r-ctl + (package + (name "r-ctl") + (version "1.0.0-0") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cran/src/contrib/ctl_" + version ".tar.gz")) + (sha256 + (base32 + "12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j")))) + (build-system r-build-system) + (inputs `( + ("r-qtl" ,r-qtl) + )) + (home-page "https://github.com/DannyArends/CTLmapping") + (synopsis "R package for analysis of genetical genomic data to identify genetic loci associated with correlation changes in quantitative traits (CTL)") + (description "Analysis of experimental crosses to identify genetic +markers associated with correlation changes in quantitative +traits (CTL). The additional correlation information obtained can be +combined with QTL information to perform de novo reconstruction of +interaction networks.") + (license license:gpl3))) |