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authorpjotrp2016-08-16 09:22:28 +0000
committerpjotrp2016-08-16 09:22:28 +0000
commit64f5bc2344bed0f426facc5d9cbbf0fcceed5683 (patch)
treef114f061c5d60e5eb6c3ede5236914438293c959
parent16e76033dab8fbd79cd5e8380ff03cf65e32c21a (diff)
downloadguix-bioinformatics-64f5bc2344bed0f426facc5d9cbbf0fcceed5683.tar.gz
Erlang and Elixir moved into main line
-rw-r--r--README.md11
-rw-r--r--gn/packages/elixir.scm67
-rw-r--r--gn/packages/erlang.scm116
3 files changed, 9 insertions, 185 deletions
diff --git a/README.md b/README.md
index 51c4aef..44f1ca6 100644
--- a/README.md
+++ b/README.md
@@ -57,7 +57,7 @@ Install the common workflow language tool cwltool with
     git clone https://github.com/genenetwork/guix-bioinformatics.git
     export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
     guix package -i python2-cwltool
-    
+
     cwtool --version
       1.0.20150916041152
 
@@ -68,7 +68,14 @@ Install the common workflow language tool cwltool with
 The LLVM D compiler was added to GNU Guix main stream!
 
     guix package -i ldc
-    
+
+## Elixir and Erlang
+
+Both languages have gone in to main line Guix:
+
+    guix package -i elixir
+    guix package -i erlang
+
 ## R/qtl
 
 R-qtl is now part of main stream GNU Guix:
diff --git a/gn/packages/elixir.scm b/gn/packages/elixir.scm
deleted file mode 100644
index 2f9bcc3..0000000
--- a/gn/packages/elixir.scm
+++ /dev/null
@@ -1,67 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
-;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages elixir)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix build-system gnu)
-  #:use-module (gn packages erlang)
-  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages tls))
-
-(define-public elixir
-  (package
-    (name "elixir")
-    (version "1.2.3")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/elixir-lang/elixir/archive/v"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
-              (sha256
-               (base32
-                "09s8469830s4070i0m04fxdhqimkdyc5k9jylm5vpfz9l3z4wvl8"))))
-    (build-system gnu-build-system)
-    (inputs
-     `(("erlang" ,erlang)))
-    (arguments
-     `(#:phases (modify-phases %standard-phases
-         (delete 'configure)
-         (add-before
-          'build 'rewrite-path
-          (lambda* (#:key inputs #:allow-other-keys)
-                   (substitute* "bin/elixir"
-                     (("ERL_EXEC=\"erl\"") (string-append "ERL_EXEC=" (which "erl"))))))                           
-        ;; (replace 'check
-        ;;          (lambda _
-        ;;           (zero? (system* "make" "test")))))))
-        )
-       #:make-flags (list (string-append "PREFIX=" %output))
-       #:tests? #f)) ;; 2845 tests, 12 failures
-    (home-page "http://elixir-lang.org/")
-    (synopsis "The Elixir programming language")
-(description "Elixir is a dynamic, functional language designed for
-building scalable and maintainable applications. Elixir leverages the
-Erlang VM, known for running low-latency, distributed and
-fault-tolerant systems, while also being successfully used in web
-development and the embedded software domain.")
-    (license license:asl2.0)))
diff --git a/gn/packages/erlang.scm b/gn/packages/erlang.scm
deleted file mode 100644
index 117057b..0000000
--- a/gn/packages/erlang.scm
+++ /dev/null
@@ -1,116 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Steve Sprang <scs@stevesprang.com>
-;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages erlang)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix build-system gnu)
-  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages tls))
-
-(define-public erlang
-  (package
-    (name "erlang")
-    ;; When updating, remember to update the hash of erlang-manpages!
-    (version "18.3")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "http://erlang.org/download/otp_src_"
-                    version
-                    ".tar.gz"))
-              (sha256
-               (base32
-                "1hy9slq9gjvwdb504dmvp6rax90isnky6chqkyq5v4ybl4lq3azx"))))
-    (build-system gnu-build-system)
-    (native-inputs
-     `(("perl" ,perl)
-
-       ;; Erlang's documentation is distributed in a separate tarball.
-       ("erlang-manpages"
-        ,(origin
-           (method url-fetch)
-           (uri (string-append "http://erlang.org/download/otp_doc_man_"
-                               version ".tar.gz"))
-           (sha256
-            (base32
-             "1hpcr7a3dx2y9gnb53bvb4g6lyvbwigadl9s3f978s01x40f32wp"))))))
-    (inputs
-     `(("ncurses" ,ncurses)
-       ("openssl" ,openssl)))
-    (arguments
-     `(#:configure-flags
-       (list (string-append "--with-ssl=" (assoc-ref %build-inputs "openssl")))
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'path-to-rm
-           (lambda _
-             (substitute* "erts/configure"
-               (("/bin/rm") (which "rm")))
-             (substitute* "lib/odbc/configure"
-               (("/bin/rm") (which "rm")))))
-         (add-after 'patch-source-shebangs 'patch-source-env
-           (lambda _
-             (let ((escripts
-                    (append
-                     (find-files "." "\\.escript")
-                     (find-files "lib/stdlib/test/escript_SUITE_data/")
-                     '("erts/lib_src/utils/make_atomics_api"
-                       "erts/preloaded/src/add_abstract_code"
-                       "lib/diameter/bin/diameterc"
-                       "lib/reltool/examples/display_args"
-                       "lib/reltool/examples/mnesia_core_dump_viewer"
-                       "lib/snmp/src/compile/snmpc.src"
-                       "make/verify_runtime_dependencies"
-                       "make/emd2exml.in"))))
-               (substitute* escripts
-                 (("/usr/bin/env") (which "env"))))))
-         (add-before 'configure 'set-erl-top
-           (lambda _
-             (setenv "ERL_TOP" (getcwd))))
-         (add-after 'install 'patch-erl
-           ;; This only works after install.
-           (lambda _
-             (substitute* (string-append (assoc-ref %outputs "out") "/bin/erl")
-               (("sed") (which "sed")))))
-         (add-after 'install 'install-doc
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (manpages (assoc-ref inputs "erlang-manpages"))
-                    (share (string-append out "/share/")))
-             (mkdir-p share)
-             (with-directory-excursion share
-               (and
-                 (zero? (system* "tar" "xvf" manpages))
-                 ;; Delete superfluous files.
-                 (for-each delete-file '("COPYRIGHT"
-                                         "PR.template"
-                                         "README"))))))))
-       #:test-target "release_tests"))
-    (home-page "http://erlang.org/")
-    (synopsis "The Erlang programming language")
-    (description
-     "Erlang is a programming language used to build massively
-scalable soft real-time systems with requirements on high
-availability.  Some of its uses are in telecoms, banking, e-commerce,
-computer telephony and instant messaging.  Erlang's runtime system has
-built-in support for concurrency, distribution and fault tolerance.")
-    (license license:asl2.0)))