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| author | Pjotr Prins | 2015-09-18 15:45:07 +0900 |
|---|---|---|
| committer | Pjotr Prins | 2015-09-18 15:45:07 +0900 |
| commit | 5dafd6b1766872d4d412e7588cc1303931c889f0 (patch) | |
| tree | 2bf86f52aceed986bb382dc544a2a9fd88545397 | |
| parent | ed90b76725d5d0594a084e0ec5330b7fd7efc132 (diff) | |
| download | guix-bioinformatics-5dafd6b1766872d4d412e7588cc1303931c889f0.tar.gz | |
README
| -rw-r--r-- | README.md | 12 |
1 files changed, 8 insertions, 4 deletions
@@ -6,9 +6,11 @@ See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) f Set the GUIX_PACKAGE_PATH to point to the root of this directory before running Guix. E.g. - env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ guix package -A cwl + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ + guix package -A cwl -or from the checked out Guix repo +or using a checked out Guix repo env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl @@ -19,14 +21,16 @@ Guix repository when tested and stable. Install the common workflow language tool cwltool with - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i python2-cwltool cwtool --version 1.0.20150916041152 ## Install R/qtl - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i r-qtl r R library(qtl) |