From 5dafd6b1766872d4d412e7588cc1303931c889f0 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Fri, 18 Sep 2015 15:45:07 +0900 Subject: README --- README.md | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 12f899f..787cfa0 100644 --- a/README.md +++ b/README.md @@ -6,9 +6,11 @@ See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) f Set the GUIX_PACKAGE_PATH to point to the root of this directory before running Guix. E.g. - env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ guix package -A cwl + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ + guix package -A cwl -or from the checked out Guix repo +or using a checked out Guix repo env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl @@ -19,14 +21,16 @@ Guix repository when tested and stable. Install the common workflow language tool cwltool with - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i python2-cwltool cwtool --version 1.0.20150916041152 ## Install R/qtl - export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ + git clone https://github.com/genenetwork/guix-bioinformatics.git + export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/ guix package -i r-qtl r R library(qtl) -- cgit v1.2.3