(define-module (gn packages r-shiny)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix download)
  #:use-module (guix build-system r)
  #:use-module (guix packages)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (gnu packages bioconductor)
  #:use-module (gnu packages cran)
  #:use-module (gnu packages javascript))

(define-public r-shiny-gn
  (deprecated-package "r-shiny-gn" r-shiny))

(define-public js-strftime-0.9
  (deprecated-package "js-strftime" js-strftime))

(define-public js-es5-shim-2
  (deprecated-package "js-es5-shim" js-es5-shim))


(define-public r-runit
  (package
    (name "r-runit")
    (version "0.4.33")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "RUnit" version))
       (sha256
        (base32 "0pybwvd57vf71vvlxdrynw5n6s5gnbqnwvq0qpd395ggqypwb95j"))))
    (properties `((upstream-name . "RUnit")))
    (build-system r-build-system)
    (home-page "https://cran.r-project.org/package=RUnit")
    (synopsis "R Unit Test Framework")
    (description
     "R functions implementing a standard Unit Testing framework, with additional code
inspection and report generation tools.")
    (license license:gpl2)))

(define-public r-org-rn-eg-db ; used by jumpshiny service
  (package
    (name "r-org-rn-eg-db")
    (version "3.20.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "org.Rn.eg.db" version 'annotation))
              (sha256
               (base32
                "009c22ry5nnklzdc5dywnf8lq41cj3141yr5vw1kgifys6lanj01"))))
    (properties
     `((upstream-name . "org.Rn.eg.db")))
    (build-system r-build-system)
    (propagated-inputs
     (list r-annotationdbi))
    (native-inputs (list r-runit))
    (home-page "https://www.bioconductor.org/packages/org.Rn.eg.db/")
    (synopsis "Genome wide annotation for Rat")
    (description
     "This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the rat.")
    (license license:artistic2.0)))