(define-module (gn packages crates-io)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system cargo)
#:use-module (past-crates packages crates-io)
#:use-module (gnu packages maths)
#:use-module (gnu packages python))
(define-public rust-assert-cmd-0.12
(package
(name "rust-assert-cmd")
(version "0.12.2")
(source (origin
(method url-fetch)
(uri (crate-uri "assert_cmd" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1xfn2spazxk3ljj9q3250a24gndja9vwa0h0rnbccdrbd4ncyvwk"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-doc-comment" ,rust-doc-comment-0.3)
("rust-escargot" ,rust-escargot-0.5)
("rust-predicates" ,rust-predicates-1)
("rust-predicates-core" ,rust-predicates-core-1)
("rust-predicates-tree" ,rust-predicates-tree-1)
("rust-wait-timeout" ,rust-wait-timeout-0.2))))
(home-page "https://github.com/assert-rs/assert_cmd")
(synopsis "Test CLI Applications.")
(description "Test CLI Applications.")
(license (list license:expat license:asl2.0))))
(define-public rust-bgzip-0.2
(package
(name "rust-bgzip")
(version "0.2.1")
(source (origin
(method url-fetch)
(uri (crate-uri "bgzip" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1kssq4hp8csg27rhggabpfiyn9xp5rh5b8al63dghk11vqs7hk5j"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-flate2" ,rust-flate2-1)
("rust-thiserror" ,rust-thiserror-1))
#:cargo-development-inputs
(("rust-clap" ,rust-clap-2)
("rust-csv" ,rust-csv-1)
("rust-tempfile" ,rust-tempfile-3))))
(home-page "https://github.com/informationsea/bgzip-rs")
(synopsis "Rust implementation of bgzip")
(description "Rust implementation of bgzip")
(license license:expat)))
(define-public rust-boomphf-0.5
(package
(name "rust-boomphf")
(version "0.5.9")
(source
(origin
(method url-fetch)
(uri (crate-uri "boomphf" version))
(file-name
(string-append name "-" version ".tar.gz"))
(sha256
(base32 "0braniw72g9yq5006sfgc1g8d4317bb524c694jw6nggizrvg3sf"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8)
("rust-log" ,rust-log-0.4)
("rust-rayon" ,rust-rayon-1)
("rust-serde" ,rust-serde-1)
("rust-wyhash" ,rust-wyhash-0.5))
#:cargo-development-inputs
(("rust-bencher" ,rust-bencher-0.1)
("rust-quickcheck" ,rust-quickcheck-1))))
(home-page "https://github.com/10XGenomics/rust-boomphf")
(synopsis "Scalable and Efficient Minimal Perfect Hash Functions")
(description "This package provides a Rust implementation of
@url{https://arxiv.org/abs/1702.03154, fast and scalable minimal perfect hashing
for massive key sets}. It generates an @acronym{MPHF, minimal perfect hash
functions} for a collection of hashable objects.")
(license license:expat)))
(define-public rust-cuckoofilter-0.5
(package
(name "rust-cuckoofilter")
(version "0.5.0")
(source (origin
(method url-fetch)
(uri (crate-uri "cuckoofilter" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"067fkr9dc118rqddr72xdldq05d31yyipvvyrmj9yrrik52ah45q"))))
(build-system cargo-build-system)
(arguments
`(#:skip-build? #t ; Not packaging dependencies
#:cargo-inputs
(("rust-byteorder" ,rust-byteorder-1)
;("rust-clippy" ,rust-clippy-0.0.302)
;("rust-farmhash" ,rust-farmhash-1)
("rust-fnv" ,rust-fnv-1)
("rust-rand" ,rust-rand-0.7)
("rust-serde" ,rust-serde-1)
("rust-serde-bytes" ,rust-serde-bytes-0.11)
("rust-serde-derive" ,rust-serde-derive-1))
#:cargo-development-inputs
(("rust-serde-json" ,rust-serde-json-1))))
(home-page "http://axiom.co")
(synopsis "Cuckoo Filter: Practically Better Than Bloom")
(description "Cuckoo Filter: Practically Better Than Bloom")
(license license:expat)))
(define-public rust-gfa-0.6
(package
(name "rust-gfa")
(version "0.6.2")
(source (origin
(method url-fetch)
(uri (crate-uri "gfa" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0ghmy4r0324s6vvmj9nmh326346nkwm7nybnpcpswnjvf02b85gw"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-bstr" ,rust-bstr-0.2)
("rust-bytemuck" ,rust-bytemuck-1)
("rust-lazy-static" ,rust-lazy-static-1)
("rust-nom" ,rust-nom-5)
("rust-regex" ,rust-regex-1)
("rust-serde" ,rust-serde-1))
#:cargo-development-inputs
(("rust-criterion" ,rust-criterion-0.3))))
(home-page "https://github.com/chfi/rs-gfa")
(synopsis
"Library for working with graphs in the GFA (Graphical Fragment Assembly) format")
(description
"Library for working with graphs in the GFA (Graphical Fragment Assembly) format")
(license license:expat)))
(define-public rust-handlegraph-0.7.0-alpha.9
(package
(name "rust-handlegraph")
(version "0.7.0-alpha.9")
(source
(origin
(method url-fetch)
(uri (crate-uri "handlegraph" version))
(file-name
(string-append name "-" version ".tar.gz"))
(sha256
(base32
"1frlcdwhycjvizb0gfb0v36vxjdi0jxagl2l2v6dzdjxpaawv9rs"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-anyhow" ,rust-anyhow-1)
("rust-boomphf" ,rust-boomphf-0.5)
("rust-bstr" ,rust-bstr-0.2)
("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5)
("rust-fnv" ,rust-fnv-1)
("rust-gfa" ,rust-gfa-0.10)
("rust-log" ,rust-log-0.4)
("rust-rayon" ,rust-rayon-1)
("rust-succinct" ,rust-succinct-0.5))
#:cargo-development-inputs
(("rust-quickcheck" ,rust-quickcheck-0.9)
("rust-rand" ,rust-rand-0.7))))
(home-page "https://github.com/chfi/rs-handlegraph")
(synopsis "Library for use in variation graphs")
(description
"This package provides a Rust implementation of VG handle graph.")
(license license:expat)))
(define-public rust-handlegraph-0.3
(package
(inherit rust-handlegraph-0.7.0-alpha.9)
(name "rust-handlegraph")
(version "0.3.0")
(source (origin
(method url-fetch)
(uri (crate-uri "handlegraph" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1sj100w4lpj7798pws85qrfrzsily5hhzh6j118rwf56sgic1yml"))))
(arguments
`(#:cargo-inputs
(("rust-bstr" ,rust-bstr-0.2)
("rust-gfa" ,rust-gfa-0.6))))))
(define-public rust-kstring-1
(package
(name "rust-kstring")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "kstring" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1r4n9fa5scikqvl736nxghcfa6s3b07xz61w43hyzs2qb3wmd3nk"))))
(build-system cargo-build-system)
(arguments
`(;#:skip-build? #t ; Uses unstable features.
#:cargo-inputs
(("rust-document-features" ,rust-document-features-0.2)
("rust-serde" ,rust-serde-1)
("rust-static-assertions" ,rust-static-assertions-1))
#:cargo-development-inputs
(("rust-criterion" ,rust-criterion-0.3)
("rust-proptest" ,rust-proptest-1))))
(home-page "https://github.com/cobalt-org/kstring")
(synopsis "String optimized for map keys")
(description "Key String provides a Rust package optimized for map keys.")
(license (list license:expat license:asl2.0))))
(define-public rust-line-drawing-0.8
(package
(name "rust-line-drawing")
(version "0.8.1")
(source (origin
(method url-fetch)
(uri (crate-uri "line-drawing" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"18a940s3mv8w5prpb99sdxykzhrvzrnymw3hvd7wisnkgbr11jqm"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-num-traits" ,rust-num-traits-0.2))
#:cargo-development-inputs
(("rust-bresenham" ,rust-bresenham-0.1)
("rust-image" ,rust-image-0.23)
("rust-rand" ,rust-rand-0.8))))
(home-page "https://github.com/expenses/line_drawing")
(synopsis
"A collection of line-drawing algorithms for use in graphics and video games.")
(description
"This package provides a collection of line-drawing algorithms for use in
graphics and video games.")
(license license:expat)))
(define-public rust-lodepng-3
(package
(name "rust-lodepng")
(version "3.8.0")
(source (origin
(method url-fetch)
(uri (crate-uri "lodepng" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1f5d9bva17sq7npw9qh7h6sh02k0ycrjx5hr147q0jv4m0qd2970"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-test-flags
(list "--release" "--"
;; Not all files included.
"--skip=test::read_icc")
#:cargo-inputs
(("rust-crc32fast" ,rust-crc32fast-1)
("rust-fallible-collections" ,rust-fallible-collections-0.4)
("rust-flate2" ,rust-flate2-1)
("rust-libc" ,rust-libc-0.2)
("rust-rgb" ,rust-rgb-0.8))))
(home-page "https://lib.rs/crates/lodepng")
(synopsis
"Reading and writing PNG files without system dependencies. Pure Rust port of LodePNG.")
(description
"Reading and writing PNG files without system dependencies. Pure Rust port of
@code{LodePNG}.")
(license license:zlib)))
(define-public rust-pyo3-0.14
(package
(name "rust-pyo3")
(version "0.14.5")
(source (origin
(method url-fetch)
(uri (crate-uri "pyo3" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1j70b9bkncgpgnfxjxyvp4mk40rp55lk6qmacxm5c2k78y9hy41m"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-cfg-if" ,rust-cfg-if-1)
("rust-hashbrown" ,rust-hashbrown-0.11)
("rust-indexmap" ,rust-indexmap-1)
("rust-indoc" ,rust-indoc-0.3)
("rust-inventory" ,rust-inventory-0.1)
("rust-libc" ,rust-libc-0.2)
("rust-num-bigint" ,rust-num-bigint-0.4)
("rust-num-complex" ,rust-num-complex-0.4)
("rust-parking-lot" ,rust-parking-lot-0.11)
("rust-paste" ,rust-paste-0.1)
("rust-pyo3-build-config" ,rust-pyo3-build-config-0.14)
("rust-pyo3-macros" ,rust-pyo3-macros-0.14)
("rust-serde" ,rust-serde-1)
("rust-unindent" ,rust-unindent-0.1))
#:cargo-development-inputs
(("rust-assert-approx-eq" ,rust-assert-approx-eq-1)
("rust-criterion" ,rust-criterion-0.3)
("rust-proptest" ,rust-proptest-0.10)
("rust-rustversion" ,rust-rustversion-1)
("rust-serde-json" ,rust-serde-json-1)
("rust-trybuild" ,rust-trybuild-1))))
(inputs (list python))
(home-page "https://github.com/pyo3/pyo3")
(synopsis "Rust bindings for the Python interpreter")
(description
"This package provides Rust bindings for Python, including tools for
creating native Python extension modules. Running and interacting with
Python code from a Rust binary is also supported.")
(license license:asl2.0)))
(define-public rust-pyo3-build-config-0.14
(package
(name "rust-pyo3-build-config")
(version "0.14.5")
(source (origin
(method url-fetch)
(uri (crate-uri "pyo3-build-config" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"13vkcl49b2x81azb613ss256k8pazrfc4fy4ny8pzgdciirn2afi"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs (("rust-once-cell" ,rust-once-cell-1))))
(home-page "https://github.com/pyo3/pyo3")
(synopsis "Build configuration for the PyO3 ecosystem")
(description "Build configuration for the PyO3 ecosystem")
(license license:asl2.0)))
(define-public rust-pyo3-macros-0.14
(package
(name "rust-pyo3-macros")
(version "0.14.5")
(source (origin
(method url-fetch)
(uri (crate-uri "pyo3-macros" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1a4fh24c5q85f31n2rwbqrai2bjprf9kzh6xvpgj8j3hblhwa2zw"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-pyo3-macros-backend" ,rust-pyo3-macros-backend-0.14)
("rust-quote" ,rust-quote-1)
("rust-syn" ,rust-syn-1))))
(home-page "https://github.com/pyo3/pyo3")
(synopsis "Proc macros for PyO3 package")
(description "Proc macros for PyO3 package")
(license license:asl2.0)))
(define-public rust-pyo3-macros-backend-0.14
(package
(name "rust-pyo3-macros-backend")
(version "0.14.5")
(source (origin
(method url-fetch)
(uri (crate-uri "pyo3-macros-backend" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1ps068jqyq1275zxxbzn6hyz9lkfz35az8waj6mzlji2jg2kyqki"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-proc-macro2" ,rust-proc-macro2-1)
("rust-pyo3-build-config" ,rust-pyo3-build-config-0.14)
("rust-quote" ,rust-quote-1)
("rust-syn" ,rust-syn-1))))
(home-page "https://github.com/pyo3/pyo3")
(synopsis "Code generation for PyO3 package")
(description "Code generation for PyO3 package")
(license license:asl2.0)))
(define-public rust-quick-csv-0.1
(package
(name "rust-quick-csv")
(version "0.1.6")
(source (origin
(method url-fetch)
(uri (crate-uri "quick-csv" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"131k8zzlplk2h62wz813jbvm0sk7v3mixwhhq34y9lmp3mqbgx7d"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs (("rust-rustc-serialize" ,rust-rustc-serialize-0.3))))
(home-page "https://github.com/tafia/quick-csv")
(synopsis "quick csv reader and decoder")
(description "quick csv reader and decoder")
(license license:expat)))
(define-public rust-succinct-0.5
(package
(name "rust-succinct")
(version "0.5.2")
(source
(origin
(method url-fetch)
(uri (crate-uri "succinct" version))
(file-name
(string-append name "-" version ".tar.gz"))
(sha256
(base32 "0654c9gq50x7djyf25zbzz3d2pc4x3z21wmjj3qbr6d9h4hbd63p"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-byteorder" ,rust-byteorder-1)
("rust-num-traits" ,rust-num-traits-0.2))
#:cargo-development-inputs
(("rust-quickcheck" ,rust-quickcheck-0.9))))
(home-page "https://github.com/tov/succinct-rs")
(synopsis "Succinct data structures for Rust")
(description "This package provides succinct data structures for Rust.")
(license (list license:expat license:asl2.0))))
(define-public rust-clap-for-jrep
(package
(name "rust-clap")
(version "2.33.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "clap" version))
(file-name
(string-append name "-" version ".tar.gz"))
(sha256
(base32
"1nf6ld3bims1n5vfzhkvcb55pdzh04bbhzf8nil5vvw05nxzarsh"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-atty" ,rust-atty-0.2)
("rust-bitflags" ,rust-bitflags-1)
("rust-clap-derive" ,rust-clap-derive-3)
("rust-indexmap" ,rust-indexmap-1)
("rust-os-str-bytes" ,rust-os-str-bytes-2)
("rust-strsim" ,rust-strsim-0.10)
("rust-termcolor" ,rust-termcolor-1)
("rust-ansi-term" ,rust-ansi-term-0.11)
("rust-terminal-size" ,rust-terminal-size-0.1)
("rust-textwrap" ,rust-textwrap-0.12)
("rust-unicode-width" ,rust-unicode-width-0.1)
("rust-vec-map" ,rust-vec-map-0.8)
("rust-yaml-rust" ,rust-yaml-rust-0.4))
#:cargo-development-inputs
(("rust-criterion" ,rust-criterion-0.3)
("rust-lazy-static" ,rust-lazy-static-1)
("rust-regex" ,rust-regex-1)
("rust-version-sync" ,rust-version-sync-0.8))))
(home-page "https://clap.rs/")
(synopsis "Command Line Argument Parser")
(description
"This package provides a simple to use, efficient, and full-featured
Command Line Argument Parser.")
(license (list license:expat license:asl2.0))))
(define-public jrep
(package
(name "jrep")
(version "0.1.3")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/joshua-laughner/jrep")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0syvlc93w26v856hp5l8ik615dfrvax6hdfzw5kqhaww3siqjaj9"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-clap" ,rust-clap-for-jrep)
("rust-exitcode" ,rust-exitcode-1)
("rust-term" ,rust-term-0.7)
("rust-regex" ,rust-regex-1)
("rust-serde" ,rust-serde-1)
("rust-serde-json" ,rust-serde-json-1))))
(home-page "https://github.com/joshua-laughner/jrep/")
(synopsis "grep for Jupyter notebooks")
(description
"@code{jrep} is @code{grep} for Jupyter notebooks. It is a command line
program that can search across multiple notebooks for specific text,
but limit itself to certain types of cells, source text, output data,
or any combination.")
(license license:gpl3+)))
(define-public notebook-tools
(let ((commit "a9db1f4f90f6df72d28bf1235ca16b988d7b86be")
(revision "0"))
(package
(name "notebook-tools")
(version commit)
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/CADLabs/notebook-tools")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0mmvqjfcsa6fq12rpay9w6ra1q8ijhmm1raqzi4d70y7wsbd20lw"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-clap" ,rust-clap-3)
("rust-exitcode" ,rust-exitcode-1)
("rust-term" ,rust-term-0.7)
("rust-regex" ,rust-regex-1)
("rust-serde" ,rust-serde-1)
("rust-serde-json" ,rust-serde-json-1))))
(home-page "https://github.com/CADLabs/notebook-tools")
(synopsis "Rust CLI tools for manipulation of Jupyter Notebooks")
(description "Rust CLI tools for manipulation of Jupyter Notebooks.")
(license #f)))) ; There is no license.
(define-public rust-trycmd-0.12
(package
(name "rust-trycmd")
(version "0.12.2")
(source
(origin
(method url-fetch)
(uri (crate-uri "trycmd" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1rwa5nzq8c5zg7lqmpkf7hyib415yxshd9amp911y8w1zss4s38p"))))
(build-system cargo-build-system)
(arguments
`(#:cargo-inputs
(("rust-backtrace" ,rust-backtrace-0.3)
("rust-concolor" ,rust-concolor-0.0.8)
("rust-content-inspector" ,rust-content-inspector-0.2)
("rust-difflib" ,rust-difflib-0.4)
("rust-dunce" ,rust-dunce-1)
("rust-escargot" ,rust-escargot-0.5)
("rust-glob" ,rust-glob-0.3)
("rust-humantime" ,rust-humantime-2)
("rust-humantime-serde" ,rust-humantime-serde-1)
("rust-normalize-line-endings" ,rust-normalize-line-endings-0.3)
("rust-os-pipe" ,rust-os-pipe-1)
("rust-rayon" ,rust-rayon-1)
("rust-schemars" ,rust-schemars-0.8)
("rust-serde" ,rust-serde-1)
("rust-serde-json" ,rust-serde-json-1)
("rust-shlex" ,rust-shlex-1)
("rust-tempfile" ,rust-tempfile-3)
("rust-toml-edit" ,rust-toml-edit-0.12)
("rust-wait-timeout" ,rust-wait-timeout-0.2)
("rust-walkdir" ,rust-walkdir-2)
("rust-yansi" ,rust-yansi-0.5))))
(home-page "https://github.com/assert-rs/trycmd")
(synopsis "Snapshot testing for a herd of CLI tests")
(description "Snapshot testing for a herd of CLI tests")
(license (list license:expat license:asl2.0))))
(define-public rust-toml-edit-0.12
(package
(name "rust-toml-edit")
(version "0.12.6")
(source
(origin
(method url-fetch)
(uri (crate-uri "toml-edit" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "0wx4wd849bmkqj0gdi041gmpfpvlyhy2ha4zpin69yw9d9npl8cl"))))
(build-system cargo-build-system)
(arguments
`(#:skip-build? #t ; Not all inputs packaged
;#:tests? #f ; Skip tests for now
#:cargo-inputs
(("rust-combine" ,rust-combine-4)
("rust-indexmap" ,rust-indexmap-1)
("rust-itertools" ,rust-itertools-0.10)
("rust-kstring" ,rust-kstring-1)
("rust-serde" ,rust-serde-1))
#:cargo-development-inputs
(("rust-criterion" ,rust-criterion-0.3)
;("rust-fs-snapshot" ,rust-fs-snapshot-0.1)
;("rust-pretty-assertions" ,rust-pretty-assertions-1)
("rust-serde-json" ,rust-serde-json-1)
("rust-toml" ,rust-toml-0.5)
;("rust-toml-test-harness" ,rust-toml-test-harness-0.3)
)))
(home-page "https://github.com/ordian/toml_edit")
(synopsis "Yet another format-preserving TOML parser.")
(description "Yet another format-preserving TOML parser.")
(license (list license:expat license:asl2.0))))
(define-public rust-vcf-0.6
(package
(name "rust-vcf")
(version "0.6.1")
(source (origin
(method url-fetch)
(uri (crate-uri "vcf" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0dc0p00a19rpmhrqcshrn2qg5l716b5s1fy8vpd3p32bw77vpbs0"))))
(build-system cargo-build-system)
(arguments
`(#:tests? #f ; Not all files included
#:cargo-inputs
(("rust-nom" ,rust-nom-7)
("rust-once-cell" ,rust-once-cell-1)
("rust-thiserror" ,rust-thiserror-1))
#:cargo-development-inputs
(("rust-clap" ,rust-clap-2)
("rust-flate2" ,rust-flate2-1))))
(home-page "https://github.com/informationsea/vcf-rs")
(synopsis "Rust implmentation of VCF parser")
(description "This package provides a rust implmentation of a VCF parser.")
(license license:asl2.0)))
(define-public rust-gsl-sys
(package
(name "rust-gsl-sys")
(version "3.0.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "GSL-sys" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "17dx066l1pbjwp9syjkzqb6fiajyb4wc814zqdfrj807rh6nfxs5"))))
(build-system cargo-build-system)
(native-inputs
(list gsl))
(arguments
`(#:cargo-inputs
(("rust-libc" ,rust-libc-0.2)
("rust-pkg-config" ,rust-pkg-config-0.3))))
(home-page "https://github.com/GuillaumeGomez/rust-GSL")
(synopsis "A rust binding for the GSL (the GNU scientific library)")
(description "This is the FFI counter-part of the Rust GSL crate. It is better to use the GSL crate directly rather than this one (unless something is missing the Rust binding!).")
(license license:expat)))
(define-public rust-gsl
(package
(name "rust-gsl")
(version "6.0.0")
(source
(origin
(method url-fetch)
(uri (crate-uri "GSL" version))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1kpiivagrsk9ags7d4k2521jwix0lqgnd3i8ayj3dfniszvcmgn9"))))
(build-system cargo-build-system)
(native-inputs
(list gsl))
(arguments
`(#:tests? #false
#:cargo-inputs
(("GSL-sys" ,rust-gsl-sys)
("paste" ,rust-paste-1))))
(home-page "https://github.com/GuillaumeGomez/rust-GSL")
(synopsis "A rust binding for the GSL (the GNU scientific library)")
(description "This package is wrapper for gsl")
(license license:gpl3+)))
(define-public gn-rust-correlation
(let ((commit "48604d86471df965f189e46580578b24191add0e")
(revision "0"))
(package
(name "gn-rust-correlation")
(version (git-version "0.1.4" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Alexanderlacuna/correlation_rust.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1x7zz0ldf9bmb4lmj3yrhbgcqanc64pl03dimrx5aw7cap006pjw"))))
(build-system cargo-build-system)
(native-inputs (list gsl))
(arguments
`(#:cargo-inputs (("rust-serde" ,rust-serde-1)
("rust-serde-json" ,rust-serde-json-1)
("GSL" ,rust-gsl)
("rust-assert-approx-eq" ,rust-assert-approx-eq-1))
#:cargo-development-inputs (("rust-criterion" ,rust-criterion-0.3))))
(home-page "https://github.com/Alexanderlacuna/correlation_rust")
(synopsis "Re-implementation of genenetwork/correlation in Rust")
(description "Re-implementation of genenetwork/correlation in Rust")
(license #f))))
