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{%extends "base.html"%}
{%from "flash_messages.html" import flash_messages%}
{%block title%}Select Grouping/Population{%endblock%}
{%block contents%}
<h1 class="heading">Select grouping/population</h1>
<div class="explainer">
<p>The data is organised in a hierarchical form, beginning with
<em>species</em> at the very top. Under <em>species</em> the data is
organised by <em>population</em>, sometimes referred to as <em>grouping</em>.
(In some really old documents/systems, you might see this referred to as
<em>InbredSet</em>.)</p>
<p>In this section, you get to define what population your data is to be
organised by.</p>
</div>
<form method="POST"
action="{{url_for('upload.rqtl2.select_population', species_id=species.SpeciesId)}}">
<legend class="heading">select grouping/population</legend>
{{flash_messages("error-select-population")}}
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<fieldset>
<label for="select:inbredset" class="form-col-1">population</label>
<select id="select:inbredset"
name="inbredset_id"
required="required"
class="form-col-2">
<option value="">Select a grouping/population</option>
{%for pop in populations%}
<option value="{{pop.InbredSetId}}">
{{pop.InbredSetName}} ({{pop.FullName}})</option>
{%endfor%}
</select>
<span class="form-input-help">If you are adding data to an already existing
population, simply pick the population from this drop-down selector. If
you cannot find your population from this list, try the form below to
create a new one..</span>
</fieldset>
<fieldset>
<input type="submit"
value="select population"
class="btn btn-main form-col-2" />
</fieldset>
</form>
<p style="color:#FE3535; padding-left:20em; font-weight:bolder;">OR</p>
<form method="POST" action="{{url_for('samples.create_population')}}">
<legend class="heading">create new grouping/population</legend>
{{flash_messages("error-create-population")}}
<input type="hidden" name="species_id" value="{{species.SpeciesId}}" />
<fieldset>
<legend>mandatory</legend>
<label for="txt:inbredset-name" class="form-col-1">name</label>
<input id="txt:inbredset-name"
name="inbredset_name"
type="text"
required="required"
placeholder="Enter grouping/population name"
class="form-col-2" />
<span class="form-input-help">This is a short name that identifies the
population. Useful for menus, and quick scanning.</span>
<label for="txt:" class="form-col-1">full name</label>
<input id="txt:inbredset-fullname"
name="inbredset_fullname"
type="text"
required = "required"
placeholder="Enter the grouping/population's full name"
class="form-col-2" />
<span class="form-input-help">This can be the same as the name above, or can
be longer. Useful for documentation, and human communication.</span>
</fieldset>
<fieldset>
<legend>Optional</legend>
<label for="num:public" class="form-col-1">public?</label>
<select id="num:public"
name="public"
class="form-col-2">
<option value="0">0 - Only accessible to authorised users</option>
<option value="1">1 - Publicly accessible to all users</option>
<option value="2" selected>
2 - Publicly accessible to all users</option>
</select>
<span class="form-input-help">This determines whether the
population/grouping will appear on the menus for users.</span>
<label for="txt:inbredset-family" class="form-col-1">family</label>
<input id="txt:inbredset-family"
name="inbredset_family"
type="text"
placeholder="I am not sure what this is about."
class="form-col-2" />
<span class="form-input-help">I do not currently know what this is about.
This is a failure on my part to figure out what this is and provide a
useful description. Please feel free to remind me.</span>
<label for="txtarea:" class="form-col-1">Description</label>
<textarea id="txtarea:description"
name="description"
rows="5"
placeholder="Enter a description of this grouping/population"
class="form-col-2"></textarea>
<span class="form-input-help">A long-form description of what the population
consists of. Useful for humans.</span>
</fieldset>
<fieldset>
<input type="submit"
value="create grouping/population"
class="btn btn-main form-col-2" />
</fieldset>
</form>
{%endblock%}
{%block javascript%}
{%endblock%}
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