gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
6 days	Lint: Silence linter by fixing minor issues.	Frederick Muriuki Muriithi

6 days	Lint: Fix imports.	Frederick Muriuki Muriithi

6 days	Lint: Get rid of single-use variable	Frederick Muriuki Muriithi

6 days	Lint: Get rid of extraneous if check.	Frederick Muriuki Muriithi

6 days	Handle FamilyOrder when creating a population.	Frederick Muriuki Muriithi

7 days	Fix minor UI bug.	Frederick Muriuki Muriithi

7 days	Initialise "Platforms" section.	Frederick Muriuki Muriithi

7 days	Move R/qtl2 upload code under the populations package.	Frederick Muriuki Muriithi

7 days	Initialise the "Expression Data" section.	Frederick Muriuki Muriithi

7 days	UI: Indicate currently active menu.	Frederick Muriuki Muriithi

10 days	Initialise UI for managing genotype datasets.	Frederick Muriuki Muriithi

11 days	Only show a single genotype dataset.	Frederick Muriuki Muriithi
	It is expected that there is only ever a single genotype dataset for any one particular population.
11 days	UI Improvement: Get rid on "Select Species" legend	Frederick Muriuki Muriithi

11 days	List genotype datasets	Frederick Muriuki Muriithi

11 days	Fix minor UI bugs.	Frederick Muriuki Muriithi

12 days	Add genotype dataset UI	Frederick Muriuki Muriithi

12 days	Separate genetic markers from encodings and datasets	Frederick Muriuki Muriithi

12 days	Put endpoint behind auth.	Frederick Muriuki Muriithi

12 days	Document the menu on the home page.	Frederick Muriuki Muriithi

13 days	Display some genotype information.	Frederick Muriuki Muriithi

13 days	Parse ints from strings safely.	Frederick Muriuki Muriithi

13 days	Enable spefifying of start point for enumerator.	Frederick Muriuki Muriithi

13 days	Select genotype's population.	Frederick Muriuki Muriithi

13 days	Provide entry-point of genotypes.	Frederick Muriuki Muriithi

13 days	UI Improvements: Move genotypes below populations.	Frederick Muriuki Muriithi

13 days	UI Improvements: Remove duplicate "Select Species"	Frederick Muriuki Muriithi

13 days	UI Improvements: Provide better copy for the page.	Frederick Muriuki Muriithi

13 days	UI Improvements: Enumerate data in tables.	Frederick Muriuki Muriithi

13 days	UI Improvements: Species	Frederick Muriuki Muriithi
	- Remove redundant information - Rename "Scientific Name" to "Organism Name" - Add helpful tooltip text to elements - Rename "TaxonId" to "Taxonomy ID"
13 days	UI Improvements: Provide some details of logged in user	Frederick Muriuki Muriithi

13 days	UI Improvements: Move headings/titles to the left.	Frederick Muriuki Muriithi

14 days	Fix minor bugs and linting and typing errors.	Frederick Muriuki Muriithi

14 days	Use new endpoint to create resource and assign appropriate roles.	Frederick Muriuki Muriithi

2024-09-13	Populations: Hook population creation to auth system.	Frederick Muriuki Muriithi

2024-09-13	Leave notes on things that need to be handled in code and UI	Frederick Muriuki Muriithi

2024-09-13	Increase default number of items displayed per page.	Frederick Muriuki Muriithi

2024-09-13	Samples: provide more informative page content.	Frederick Muriuki Muriithi

2024-09-13	Put views behind authorisation.	Frederick Muriuki Muriithi

2024-09-13	Initialise genotypes' UI	Frederick Muriuki Muriithi

2024-09-12	Add "Family" to the UI	Frederick Muriuki Muriithi

2024-09-12	Save the updated species details.	Frederick Muriuki Muriithi

2024-09-10	Improve "Edit species" UI.	Frederick Muriuki Muriithi

2024-09-10	Require that user selects the family.	Frederick Muriuki Muriithi

2024-09-09	Enable samples uploads.	Frederick Muriuki Muriithi

2024-09-09	Initialise samples uploads	Frederick Muriuki Muriithi
	* Move existing code to new module * Rework the UI: create new templates * Rework the routes: Select species and populations before attempting an upload.
2024-09-09	Display species details in populations views.	Frederick Muriuki Muriithi

2024-09-06	Add more fields when creating a population	Frederick Muriuki Muriithi
	Add more of the missing fields when creating a population, to ensure that the created population works as expected.
2024-09-05	Provide basic UI for editing the Species details.	Frederick Muriuki Muriithi

2024-09-05	Improve error messaging for "Create Population" feature.	Frederick Muriuki Muriithi

2024-09-05	Synchronise token refreshing.	Frederick Muriuki Muriithi
	When running flask with multiple threads/workers, as happens when using gunicorn, there is a potential for more than one thread running with an expired token, leading to multiple uncoordinated token refreshes. This commit coordinates the threads in the case there is need to refresh a token, ensuring only one thread does the token refresh.