| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-09-17 | Parse ints from strings safely. | Frederick Muriuki Muriithi | |
| 2024-09-17 | Enable spefifying of start point for enumerator. | Frederick Muriuki Muriithi | |
| 2024-09-17 | Select genotype's population. | Frederick Muriuki Muriithi | |
| 2024-09-17 | Provide entry-point of genotypes. | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Move genotypes below populations. | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Remove duplicate "Select Species" | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Provide better copy for the page. | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Enumerate data in tables. | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Species | Frederick Muriuki Muriithi | |
| - Remove redundant information - Rename "Scientific Name" to "Organism Name" - Add helpful tooltip text to elements - Rename "TaxonId" to "Taxonomy ID" | |||
| 2024-09-17 | UI Improvements: Provide some details of logged in user | Frederick Muriuki Muriithi | |
| 2024-09-17 | UI Improvements: Move headings/titles to the left. | Frederick Muriuki Muriithi | |
| 2024-09-16 | Fix minor bugs and linting and typing errors. | Frederick Muriuki Muriithi | |
| 2024-09-16 | Use new endpoint to create resource and assign appropriate roles. | Frederick Muriuki Muriithi | |
| 2024-09-13 | Populations: Hook population creation to auth system. | Frederick Muriuki Muriithi | |
| 2024-09-13 | Leave notes on things that need to be handled in code and UI | Frederick Muriuki Muriithi | |
| 2024-09-13 | Increase default number of items displayed per page. | Frederick Muriuki Muriithi | |
| 2024-09-13 | Samples: provide more informative page content. | Frederick Muriuki Muriithi | |
| 2024-09-13 | Put views behind authorisation. | Frederick Muriuki Muriithi | |
| 2024-09-13 | Initialise genotypes' UI | Frederick Muriuki Muriithi | |
| 2024-09-12 | Add "Family" to the UI | Frederick Muriuki Muriithi | |
| 2024-09-12 | Save the updated species details. | Frederick Muriuki Muriithi | |
| 2024-09-10 | Improve "Edit species" UI. | Frederick Muriuki Muriithi | |
| 2024-09-10 | Require that user selects the family. | Frederick Muriuki Muriithi | |
| 2024-09-09 | Enable samples uploads. | Frederick Muriuki Muriithi | |
| 2024-09-09 | Initialise samples uploads | Frederick Muriuki Muriithi | |
| * Move existing code to new module * Rework the UI: create new templates * Rework the routes: Select species and populations before attempting an upload. | |||
| 2024-09-09 | Display species details in populations views. | Frederick Muriuki Muriithi | |
| 2024-09-06 | Add more fields when creating a population | Frederick Muriuki Muriithi | |
| Add more of the missing fields when creating a population, to ensure that the created population works as expected. | |||
| 2024-09-05 | Provide basic UI for editing the Species details. | Frederick Muriuki Muriithi | |
| 2024-09-05 | Improve error messaging for "Create Population" feature. | Frederick Muriuki Muriithi | |
| 2024-09-05 | Synchronise token refreshing. | Frederick Muriuki Muriithi | |
| When running flask with multiple threads/workers, as happens when using gunicorn, there is a potential for more than one thread running with an expired token, leading to multiple uncoordinated token refreshes. This commit coordinates the threads in the case there is need to refresh a token, ensuring only one thread does the token refresh. | |||
| 2024-09-04 | Provide 'edit species' endpoint | Frederick Muriuki Muriithi | |
| * Verify new authorisation wrapper works as expected. | |||
| 2024-09-04 | Provide top-level navigation placeholder link. | Frederick Muriuki Muriithi | |
| 2024-09-04 | Introduce wrapper that validates tokens | Frederick Muriuki Muriithi | |
| Validate token and pass it on to functions that require more fine-grained authorisation checks. | |||
| 2024-09-04 | Update retrival of JSON Web Keys | Frederick Muriuki Muriithi | |
| * Introduce the function `auth_server_jwks()` to use for fetching the keys from the session if present, or from the server when absent or out-of-date. It also handles updating the keys in the session. * Remove the unnecessary verification of JWKs until the point where that is needed, i.e. at the point(s) where there is need to verify authorisation. | |||
| 2024-09-04 | Add function to update the JSON Web Keys in the session | Frederick Muriuki Muriithi | |
| When new JSON Web Keys (JWKs) are fetched from the server, the function added in this commit will help with updating them in the session for subsequent uses, validating the tokens when needed. | |||
| 2024-09-04 | Improve styling. | Frederick Muriuki Muriithi | |
| 2024-09-04 | Create populations (InbredSet groups) under Species. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Improve UI copy. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Display any error messages. | Frederick Muriuki Muriithi | |
| 2024-09-03 | View a specific population's details. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Improve UI styling. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Provide means to debug actual query run and params used. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Update navigation scaffolding. | Frederick Muriuki Muriithi | |
| Provide the navigation to the features we expect to provide with the system, even though, at this point, the features have not been implemented yet. | |||
| 2024-09-03 | Put populations under species: improve hierarchy. | Frederick Muriuki Muriithi | |
| Populations cannot exist without the species they are related to. This commit updates the URI hierarchy to reflect that expectation. | |||
| 2024-09-03 | Initialise the populations package and update references. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Extract common UI pattern to separate module for reusability. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Provide generic way to select species. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Provide UI for viewing species details. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Enable third level of breadcrumbs. | Frederick Muriuki Muriithi | |
| 2024-09-03 | Update species queries | Frederick Muriuki Muriithi | |
| * Use the more reliable 'Species.Id' field * Provide more of a species' details | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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