gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
8 days	Enable autofill of information from PubMed.	Frederick Muriuki Muriithi

8 days	Move functions to fetch pubmed data out into a separate js file.	Frederick Muriuki Muriithi

8 days	Move generic utility functions to the utils.js file.	Frederick Muriuki Muriithi

8 days	Provide UI for publication creation.	Frederick Muriuki Muriithi

8 days	Mark unimplemented features.	Frederick Muriuki Muriithi

8 days	Provide tooltip text.	Frederick Muriuki Muriithi

8 days	Display logged in user's email.	Frederick Muriuki Muriithi

9 days	View a publication's details.	Frederick Muriuki Muriithi

9 days	Fetch phenotypes linked to a particular publication.	Frederick Muriuki Muriithi

9 days	Fetch a publication by its ID.	Frederick Muriuki Muriithi

9 days	Initialise entry-point for managing publications.	Frederick Muriuki Muriithi

9 days	Fetch ALL publications from the database.	Frederick Muriuki Muriithi

11 days	Fix display of upload errors for samples	Frederick Muriuki Muriithi
	* Update the uri to fit in with existing paradigm * Pass the species and population to the endpoint
2025-04-21	Update the previews, in the case where resumables exist.	Frederick Muriuki Muriithi

2025-04-21	Improve check for file existence.	Frederick Muriuki Muriithi

2025-04-21	Associate each preview table with appropriate resumable object.	Frederick Muriuki Muriithi

2025-04-21	Update to bootstrap 5 classes.	Frederick Muriuki Muriithi

2025-04-21	Proceed to jobs status update page.	Frederick Muriuki Muriithi

2025-04-21	Implement rudimentary status update page for background jobs.	Frederick Muriuki Muriithi

2025-04-21	Use module-specific logger.	Frederick Muriuki Muriithi

2025-04-21	Add "DataId" to top-level trait details.	Frederick Muriuki Muriithi
	The `DataId` is unique in the `PublishXRef` table.
2025-04-14	Fix typo.	Frederick Muriuki Muriithi

2025-04-14	Move common fieldnames into exportable variable.	Frederick Muriuki Muriithi

2025-04-14	Implement difference computations.	Frederick Muriuki Muriithi

2025-04-14	Add tests for new difference computation function.	Frederick Muriuki Muriithi

2025-04-14	Convert PubMed ID to int.	Frederick Muriuki Muriithi

2025-04-14	Update existing linked publication(s) rather than creating new.	Frederick Muriuki Muriithi

2025-04-14	Log out job command for easier debug.	Frederick Muriuki Muriithi

2025-04-14	Provide species, population and dataset identifiers as job metadata.	Frederick Muriuki Muriithi

2025-04-14	Update imports.	Frederick Muriuki Muriithi

2025-04-14	Return created objects with their IDs	Frederick Muriuki Muriithi

2025-04-14	Add types for connection objects.	Frederick Muriuki Muriithi

2025-04-14	Implement computation for publication differences.	Frederick Muriuki Muriithi

2025-04-14	Move code to save new publications to database.	Frederick Muriuki Muriithi

2025-04-11	Fix bug: Provide empty defaults, and fix type.	Frederick Muriuki Muriithi

2025-04-11	Move code to fetch phenotype publications from DB to publications package.	Frederick Muriuki Muriithi

2025-04-11	Move code to fetch publications from pubmed to publications module.	Frederick Muriuki Muriithi

2025-04-11	Write test for computing differences for publications in bulk edits.	Frederick Muriuki Muriithi

2025-04-11	Update application initialisation to allow config updates for tests.	Frederick Muriuki Muriithi

2025-04-09	Use class from Bootstrap5 for hiding elements.	Frederick Muriuki Muriithi

2025-04-05	Don't clear anonymous sessions with every check for login.	Frederick Muriuki Muriithi

2025-04-05	Add base "alert" class for alerts for bootstrap 5.	Frederick Muriuki Muriithi

2025-04-05	Fix fetching of user details.	Frederick Muriuki Muriithi
	Move the fetching of user details to the client module. Add checks to only fetch the details if they are not updated yet.
2025-04-05	Set "logged_in" key together with the token.	Frederick Muriuki Muriithi

2025-04-05	Override only the user details provided rather than the entire object.	Frederick Muriuki Muriithi

2025-03-26	Pass in system log-level to script.	Frederick Muriuki Muriithi

2025-03-26	Provide connection URI for mariadb.	Frederick Muriuki Muriithi

2025-03-26	Update comment text.	Frederick Muriuki Muriithi

2025-03-25	Run job with unbuffered outputs.	Frederick Muriuki Muriithi

2025-03-25	Update name of launcher script used.	Frederick Muriuki Muriithi