| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 8 days | PoC: Use independent module-level loggers with application | Frederick Muriuki Muriithi | |
| Using flask.current_app.logger for logging in modules leads to the modules requiring an app context, even when the module itself could be used outside of the application. This commit provides a proof-of-concept (really, me finally putting in the effort to figure out logging) for how we could allow independent loggers at the module level, that can then be hooked up to the main logging in the system in question. | |||
| 8 days | Format abstracts a little better. | Frederick Muriuki Muriithi | |
| 11 days | Provide correct redirection uri, and data. | Frederick Muriuki Muriithi | |
| 11 days | Encode data to UTF-8 to prevent persistence errors. | Frederick Muriuki Muriithi | |
| 12 days | Search for radio was slow for some reason. | Frederick Muriuki Muriithi | |
| 12 days | Allow selection from existing publications. | Frederick Muriuki Muriithi | |
| 12 days | Do not auto-update publication details on conflict | Frederick Muriuki Muriithi | |
| Auto-update of a publication's details on an "insert conflict" would lead to a bug where publications could be overwritten with the wrong information. Rather than auto-update, explicitly indicate the error, and let the user manually edit the record to avoid data inconsistency. | |||
| 12 days | Implement creating publications. | Frederick Muriuki Muriithi | |
| 12 days | Add logging. | Frederick Muriuki Muriithi | |
| Without this logging statement, the chunk merging fails with an error that it cannot find one of the chunks when attempting to delete it. That error disappears as soon as I attempt to log out the error and debug. | |||
| 12 days | Enable autofill of information from PubMed. | Frederick Muriuki Muriithi | |
| 12 days | Move functions to fetch pubmed data out into a separate js file. | Frederick Muriuki Muriithi | |
| 12 days | Move generic utility functions to the utils.js file. | Frederick Muriuki Muriithi | |
| 12 days | Provide UI for publication creation. | Frederick Muriuki Muriithi | |
| 12 days | Mark unimplemented features. | Frederick Muriuki Muriithi | |
| 12 days | Provide tooltip text. | Frederick Muriuki Muriithi | |
| 12 days | Display logged in user's email. | Frederick Muriuki Muriithi | |
| 12 days | View a publication's details. | Frederick Muriuki Muriithi | |
| 12 days | Fetch phenotypes linked to a particular publication. | Frederick Muriuki Muriithi | |
| 12 days | Fetch a publication by its ID. | Frederick Muriuki Muriithi | |
| 12 days | Initialise entry-point for managing publications. | Frederick Muriuki Muriithi | |
| 12 days | Fetch *ALL* publications from the database. | Frederick Muriuki Muriithi | |
| 2025-04-25 | Fix display of upload errors for samples | Frederick Muriuki Muriithi | |
| * Update the uri to fit in with existing paradigm * Pass the species and population to the endpoint | |||
| 2025-04-21 | Update the previews, in the case where resumables exist. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Improve check for file existence. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Associate each preview table with appropriate resumable object. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Update to bootstrap 5 classes. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Proceed to jobs status update page. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Implement rudimentary status update page for background jobs. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Use module-specific logger. | Frederick Muriuki Muriithi | |
| 2025-04-21 | Add "DataId" to top-level trait details. | Frederick Muriuki Muriithi | |
| The `DataId` is unique in the `PublishXRef` table. | |||
| 2025-04-14 | Fix typo. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Move common fieldnames into exportable variable. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Implement difference computations. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Add tests for new difference computation function. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Convert PubMed ID to int. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Update existing linked publication(s) rather than creating new. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Log out job command for easier debug. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Provide species, population and dataset identifiers as job metadata. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Update imports. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Return created objects with their IDs | Frederick Muriuki Muriithi | |
| 2025-04-14 | Add types for connection objects. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Implement computation for publication differences. | Frederick Muriuki Muriithi | |
| 2025-04-14 | Move code to save new publications to database. | Frederick Muriuki Muriithi | |
| 2025-04-11 | Fix bug: Provide empty defaults, and fix type. | Frederick Muriuki Muriithi | |
| 2025-04-11 | Move code to fetch phenotype publications from DB to publications package. | Frederick Muriuki Muriithi | |
| 2025-04-11 | Move code to fetch publications from pubmed to publications module. | Frederick Muriuki Muriithi | |
| 2025-04-11 | Write test for computing differences for publications in bulk edits. | Frederick Muriuki Muriithi | |
| 2025-04-11 | Update application initialisation to allow config updates for tests. | Frederick Muriuki Muriithi | |
| 2025-04-09 | Use class from Bootstrap5 for hiding elements. | Frederick Muriuki Muriithi | |
| 2025-04-05 | Don't clear anonymous sessions with every check for login. | Frederick Muriuki Muriithi | |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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