Age | Commit message (Collapse) | Author | |
---|---|---|---|
2024-01-04 | Process sex and cross information data in "covar" files. | Frederick Muriuki Muriithi | |
2024-01-04 | Rename test module | Frederick Muriuki Muriithi | |
While 'covar' files can contain cross information, they do not have to, and therefore, we need to test for cross information separately. | |||
2024-01-04 | Parse multiple files with same file key. | Frederick Muriuki Muriithi | |
2024-01-04 | Test parsing of multiple files for single key | Frederick Muriuki Muriithi | |
2024-01-04 | Add tests for parsing cross information (covar) files. | Frederick Muriuki Muriithi | |
2024-01-04 | Add tests for parsing 'phenocovar' files. | Frederick Muriuki Muriithi | |
2024-01-04 | Rename test module. | Frederick Muriuki Muriithi | |
2024-01-03 | Use generic parser. Remove obsoleted functions. | Frederick Muriuki Muriithi | |
2024-01-03 | Parse founder_geno files. Generalise parsing files. | Frederick Muriuki Muriithi | |
* Add tests for parsing "founder_geno" files * Extract common file parsing structure out to more general function * Use generic function to parse "founder_geno" file in test | |||
2024-01-03 | Add tests for `founder_geno` parsing. | Frederick Muriuki Muriithi | |
2024-01-03 | Parse the phenotype data from the R/qtl2 bundle. | Frederick Muriuki Muriithi | |
2024-01-03 | Extract processing of transposed files into reusable function. | Frederick Muriuki Muriithi | |
The processing of transposed files is similar across files. This commit extracts the common parts into a separate function. | |||
2023-12-28 | Rework parsing of transposed geno files. | Frederick Muriuki Muriithi | |
2023-12-28 | Handle transposed geno files. | Frederick Muriuki Muriithi | |
2023-12-27 | Tests: Test parsing of non-transposed geno files. | Frederick Muriuki Muriithi | |
Check that the parsing of non-transposed geno files. Leave in failing test for transposed geno files. | |||
2023-12-27 | Tests: Test parsing of pmap files. Merge testing of map files. | Frederick Muriuki Muriithi | |
2023-12-27 | Tests: Add tests for parsing gmap files. | Frederick Muriuki Muriithi | |