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path: root/tests/r_qtl/test_r_qtl2_qc.py
AgeCommit message (Collapse)Author
2024-02-20Track filename in the errorsFrederick Muriuki Muriithi
R/qtl2 bundles can contain more than one file, of the same type. When errors are encountered in any of the files, we need to be able to inform the user which file it is, in addition to the line and column number.
2024-02-12Provide the key for each file listed in the control file.Frederick Muriuki Muriithi
2024-02-08Use error objects rather than plain tuple values.Frederick Muriuki Muriithi
2024-02-06Check that pheno values are numerical and at least 3 decimal placesFrederick Muriuki Muriithi
2024-02-05Check that data in geno file is validFrederick Muriuki Muriithi
Add a function to ensure the values in the geno files are all listed in the control data under the "genotypes" key.
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-02-05Retrieve list of all files, and list of missing filesFrederick Muriuki Muriithi
Add QC a function to list all files listed in the control file, and another to list only the files missing from the bundle.