| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-01-15 | Update imports: `take` was moved to different package. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Add missing import. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Revert "QC: Check for only one decimal place." | Frederick Muriuki Muriithi | |
| This reverts commit c213b0010c3ddc8d3215adab65bd489a9b884e30. After a larger discussion with Arthur, Rob and Pjotr present, it was verified that the strict checks are important. This reverts the commit that allowed for looser checks. | |||
| 2024-01-02 | Mark tests as unit tests. | Frederick Muriuki Muriithi | |
| 2023-11-24 | QC: Check for only one decimal place. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Linting: Fix linting errors. | Frederick Muriuki Muriithi | |
| 2022-11-16 | qc: Allow whole numbers or numbers where the decimals are all zeroes | Frederick Muriuki Muriithi | |
| 2022-06-28 | Check for inconsistent columns | Frederick Muriuki Muriithi | |
| The number columns in each contents line should be equal to the nember of columns in the header line. | |||
| 2022-06-10 | Update tests: Accept zeroes as valid values | Frederick Muriuki Muriithi | |
| 2022-05-18 | Remove obsoleted code. Fix linting errors. | Frederick Muriuki Muriithi | |
| Remove the old code that relied on exceptions to parse errors in the uploaded files. | |||
| 2022-05-18 | Parse files with new non-exception functions | Frederick Muriuki Muriithi | |
| Parse the files with the new functions that return error objects instead of raising exceptions | |||
| 2022-05-18 | Return errors when found or None otherwise | Frederick Muriuki Muriithi | |
| This commit adds a number of functions that return the error object when an error is found, or `None` otherwise. It avoids the use of exceptions as control flow constructs. | |||
| 2022-04-25 | Advance seek_position on error | Frederick Muriuki Muriithi | |
| Advance the seek position, once we have yielded up an error to causing an infinite loop in certain conditions, where the `parse_errors` function ends up resuming the gile in the same position once it experiences an error. | |||
| 2022-04-25 | `take`: function to select a few items from an iterable | Frederick Muriuki Muriithi | |
| To avoid processing all the items in an iterable, the `take` function is added in this commit. It realised a limited number (specified at call time) of items from the iterable given. | |||
| 2022-04-21 | Collect all the errors | Frederick Muriuki Muriithi | |
| Build a function to collect all the parsing errors into a "sequence" of dict objects containing the issues found. | |||
| 2022-04-20 | Update parameters for tests | Frederick Muriuki Muriithi | |
| Derive a "correct" sample file from an existing sample file with errors for testing with large files. Fix issue caught by test. | |||
| 2022-04-20 | Fix linting issues | Frederick Muriuki Muriithi | |
| 2022-04-13 | Implement remaining file parsing tests | Frederick Muriuki Muriithi | |
| * Implement remaining file parsing tests and some helpers functions needed for ensuring the tests work. | |||
| 2022-04-13 | Add test for duplicate headers | Frederick Muriuki Muriithi | |
| 2022-04-13 | Implement test for parsing that fails | Frederick Muriuki Muriithi | |
| * Improve tests that ensure parsing fails in case the file has errors * Add strains.csv file * Implement minimum viable functionality that passes the implemented tests | |||
| 2022-04-13 | Add tests outline for file parsing | Frederick Muriuki Muriithi | |
| Add dummy failing tests and a stub for the parsing of the files | |||
| 2022-04-13 | Update Exception name | Frederick Muriuki Muriithi | |
| Change the exception name to be more descriptive. | |||
| 2022-04-11 | Add tests for headers | Frederick Muriuki Muriithi | |
| * Add tests to check for validity of the headers * Add stubs for the tests | |||
| 2022-04-11 | Implement tests and stubs for functions under test | Frederick Muriuki Muriithi | |
| 2022-04-11 | Set up initial, failing tests for cell values | Frederick Muriuki Muriithi | |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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