| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-02-20 | Track filename in the errors | Frederick Muriuki Muriithi | |
| R/qtl2 bundles can contain more than one file, of the same type. When errors are encountered in any of the files, we need to be able to inform the user which file it is, in addition to the line and column number. | |||
| 2024-02-12 | Build generic decimal places checker. | Frederick Muriuki Muriithi | |
| 2024-01-15 | Update imports: `take` was moved to different package. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Add missing import. | Frederick Muriuki Muriithi | |
| 2024-01-05 | Revert "QC: Check for only one decimal place." | Frederick Muriuki Muriithi | |
| This reverts commit c213b0010c3ddc8d3215adab65bd489a9b884e30. After a larger discussion with Arthur, Rob and Pjotr present, it was verified that the strict checks are important. This reverts the commit that allowed for looser checks. | |||
| 2024-01-02 | Mark tests as unit tests. | Frederick Muriuki Muriithi | |
| 2023-11-24 | QC: Check for only one decimal place. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Linting: Fix linting errors. | Frederick Muriuki Muriithi | |
| 2022-11-16 | qc: Allow whole numbers or numbers where the decimals are all zeroes | Frederick Muriuki Muriithi | |
| 2022-06-28 | Check for inconsistent columns | Frederick Muriuki Muriithi | |
| The number columns in each contents line should be equal to the nember of columns in the header line. | |||
| 2022-06-10 | Update tests: Accept zeroes as valid values | Frederick Muriuki Muriithi | |
| 2022-05-18 | Remove obsoleted code. Fix linting errors. | Frederick Muriuki Muriithi | |
| Remove the old code that relied on exceptions to parse errors in the uploaded files. | |||
| 2022-05-18 | Parse files with new non-exception functions | Frederick Muriuki Muriithi | |
| Parse the files with the new functions that return error objects instead of raising exceptions | |||
| 2022-05-18 | Return errors when found or None otherwise | Frederick Muriuki Muriithi | |
| This commit adds a number of functions that return the error object when an error is found, or `None` otherwise. It avoids the use of exceptions as control flow constructs. | |||
| 2022-04-25 | Advance seek_position on error | Frederick Muriuki Muriithi | |
| Advance the seek position, once we have yielded up an error to causing an infinite loop in certain conditions, where the `parse_errors` function ends up resuming the gile in the same position once it experiences an error. | |||
| 2022-04-25 | `take`: function to select a few items from an iterable | Frederick Muriuki Muriithi | |
| To avoid processing all the items in an iterable, the `take` function is added in this commit. It realised a limited number (specified at call time) of items from the iterable given. | |||
| 2022-04-21 | Collect all the errors | Frederick Muriuki Muriithi | |
| Build a function to collect all the parsing errors into a "sequence" of dict objects containing the issues found. | |||
| 2022-04-20 | Update parameters for tests | Frederick Muriuki Muriithi | |
| Derive a "correct" sample file from an existing sample file with errors for testing with large files. Fix issue caught by test. | |||
| 2022-04-20 | Fix linting issues | Frederick Muriuki Muriithi | |
| 2022-04-13 | Implement remaining file parsing tests | Frederick Muriuki Muriithi | |
| * Implement remaining file parsing tests and some helpers functions needed for ensuring the tests work. | |||
| 2022-04-13 | Add test for duplicate headers | Frederick Muriuki Muriithi | |
| 2022-04-13 | Implement test for parsing that fails | Frederick Muriuki Muriithi | |
| * Improve tests that ensure parsing fails in case the file has errors * Add strains.csv file * Implement minimum viable functionality that passes the implemented tests | |||
| 2022-04-13 | Add tests outline for file parsing | Frederick Muriuki Muriithi | |
| Add dummy failing tests and a stub for the parsing of the files | |||
| 2022-04-13 | Update Exception name | Frederick Muriuki Muriithi | |
| Change the exception name to be more descriptive. | |||
| 2022-04-11 | Add tests for headers | Frederick Muriuki Muriithi | |
| * Add tests to check for validity of the headers * Add stubs for the tests | |||
| 2022-04-11 | Implement tests and stubs for functions under test | Frederick Muriuki Muriithi | |
| 2022-04-11 | Set up initial, failing tests for cell values | Frederick Muriuki Muriithi | |
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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