gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
12 days	Pass the redis connection and fully qualified job id	Frederick Muriuki Muriithi
	Pass the redis connection on to the function used to build main since it might need to use a connection to redis. Also pass the computed fully qualified job id rather than recomputing it every time. Update dependent functions to take the new arguments.
2024-10-24	Parse entire namespace object rather than individual values.	Frederick Muriuki Muriithi

2024-10-24	Move logger creation to `build_main` function	Frederick Muriuki Muriithi
	Since the module-level loggers are built mostly the same, move the creation of the logger to the more general function to reduce repetition.
2024-04-03	Reduce size of data inserted per query	Frederick Muriuki Muriithi
	Reduce the size of data inserted per query since MariDB allows a packet with a maximum size of 1GB. This should hopefully resolve the …OperationalError: (2006, 'Server has gone away') error.
2024-02-05	Fix linting and type errors.	Frederick Muriuki Muriithi

2024-01-22	scripts: Pass in logger to get detailed updates.	Frederick Muriuki Muriithi

2024-01-19	scripts: Process R/qtl2 bundle	Frederick Muriuki Muriithi
	Build script to start the processing of the R/qtl2 bundle.
2024-01-16	Filter out items with values of `None`.	Frederick Muriuki Muriithi
	The ProbeSetData table does not allow `NULL` for the `value` column for good reason - if there is no value, just don't have a record for that particular sample.
2024-01-15	Update imports: `take` was moved to different package.	Frederick Muriuki Muriithi

2024-01-15	Process the `pheno` files.	Frederick Muriuki Muriithi
	Process the data in the pheno files and insert it into the database.
2024-01-15	Initialise `install_phenos` script.	Frederick Muriuki Muriithi