Age | Commit message (Collapse) | Author | |
---|---|---|---|
2024-04-03 | Reduce size of data inserted per query | Frederick Muriuki Muriithi | |
Reduce the size of data inserted per query since MariDB allows a packet with a maximum size of 1GB. This should hopefully resolve the …OperationalError: (2006, 'Server has gone away') error. | |||
2024-02-05 | Fix linting and type errors. | Frederick Muriuki Muriithi | |
2024-01-22 | scripts: Pass in logger to get detailed updates. | Frederick Muriuki Muriithi | |
2024-01-19 | scripts: Process R/qtl2 bundle | Frederick Muriuki Muriithi | |
Build script to start the processing of the R/qtl2 bundle. | |||
2024-01-16 | Filter out items with values of `None`. | Frederick Muriuki Muriithi | |
The ProbeSetData table does not allow `NULL` for the `value` column for good reason - if there is no value, just don't have a record for that particular sample. | |||
2024-01-15 | Update imports: `take` was moved to different package. | Frederick Muriuki Muriithi | |
2024-01-15 | Process the `pheno` files. | Frederick Muriuki Muriithi | |
Process the data in the pheno files and insert it into the database. | |||
2024-01-15 | Initialise `install_phenos` script. | Frederick Muriuki Muriithi | |