gn-uploader - gn-uploader: Data uploader for GeneNetwork

Age	Commit message (Collapse)	Author
2024-01-20	Fetch sample/case names from database	Frederick Muriuki Muriithi
	Fetch the sample/case names from the database rather than from a static file in the repository. Issue: https://issues.genenetwork.org/issues/quality-control/read-samples-from-database-by-species
2024-01-15	Update imports: `take` was moved to different package.	Frederick Muriuki Muriithi

2022-07-07	Replace 'magic' with builtin 'mimetypes'	Frederick Muriuki Muriithi
	Use the builtin mimetypes which gives better results
2022-06-28	Check for inconsistent columns	Frederick Muriuki Muriithi
	The number columns in each contents line should be equal to the nember of columns in the header line.
2022-05-19	Extract progress indication from the parsing	Frederick Muriuki Muriithi
	Since progress indication is not part of the parsing, this commit extracts the progress indication into functions with well defined input arguments that hide the progress indication logic from the parsing function.
2022-05-18	Update CLI: use new error collection code	Frederick Muriuki Muriithi
	Use the new code that collects the errors in the CLI client.
2022-05-11	Tag string as a python f-string to fix error display bug	Frederick Muriuki Muriithi

2022-05-02	Optimise strain names parsing	Frederick Muriuki Muriithi
	- Use a way faster way of parsing the strains file
2022-04-27	Enable managing app via setup.py	Frederick Muriuki Muriithi
	While the application is developed with GNU Guix, the end user might not be using it, and therefore, this commit provides a way for the user to install the application with the usual python package management systems.