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path: root/scripts/process_rqtl2_bundle.py
AgeCommit message (Collapse)Author
2024-12-03Pass the redis connection and fully qualified job idFrederick Muriuki Muriithi
Pass the redis connection on to the function used to build main since it might need to use a connection to redis. Also pass the computed fully qualified job id rather than recomputing it every time. Update dependent functions to take the new arguments.
2024-11-22Use gn-libs code for db connection.Frederick Muriuki Muriithi
Use the code in gn-libs to connect to the database, rather than a local module.
2024-10-24Parse entire namespace object rather than individual values.Frederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
2024-07-25Rename module: qc_app --> uploaderFrederick Muriuki Muriithi
2024-02-05Run QC on the 'geno' file in R/qtl2 bundle.Frederick Muriuki Muriithi
2024-02-05Add a QC step: Check all listed files existFrederick Muriuki Muriithi
Add a QC step to the R/qtl2 bundle processing - check that all files that are listed in the control file also exist in the bundle.
2024-01-23Update scripts to use redis prefix.Frederick Muriuki Muriithi
2024-01-22scripts: Pass in logger to get detailed updates.Frederick Muriuki Muriithi
2024-01-22UI: Show progress of R/qtl2 bundle processing.Frederick Muriuki Muriithi
2024-01-19scripts: Process R/qtl2 bundleFrederick Muriuki Muriithi
Build script to start the processing of the R/qtl2 bundle.