| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-02-12 | Provide better error messaging | Frederick Muriuki Muriithi | |
| Provide a better error message that can help the user figure out what they did wrong and fix it for themselves instead of the older, cryptic and extremely unhelpful error message. | |||
| 2024-01-15 | Update imports: `take` was moved to different package. | Frederick Muriuki Muriithi | |
| 2023-12-20 | Fix ID column key | Frederick Muriuki Muriithi | |
| Fix the wrong assumption that the ID key will always be "ProbeSetID". The key for the ID column could change from study to study or dataset to dataset. | |||
| 2023-11-30 | Bug: Fix insertion error | Frederick Muriuki Muriithi | |
| Fix a bug that was causing the data insertion to fail. | |||
| 2023-11-30 | Fix errors caught by pylint and mypy. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Log out DB errors even when handled | Frederick Muriuki Muriithi | |
| Log out any DB errors that occur to help with tracking and debugging failures. | |||
| 2023-11-15 | Remove debugging statement. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Bug: Insert ProbeSets before average data and cross-refs | Frederick Muriuki Muriithi | |
| Insert the ProbeSets first before inserting the average data and cross-referencing it. | |||
| 2023-11-15 | mypy: Fix typing errors. | Frederick Muriuki Muriithi | |
| 2023-11-15 | Linting: Fix linting errors. | Frederick Muriuki Muriithi | |
| 2023-10-30 | Prevent overwrite. Avoid inserting same probeset multiple times. | Frederick Muriuki Muriithi | |
| * Avoid overwriting existing data by adding a random string to the name of the ProbeSet * Read ProbeSet names separately from the means for the strains, to avoid entering the same ProbeSet record over and over with varying names. | |||
| 2023-10-18 | Link to `ProbeSet.Id` in XRef Table | Frederick Muriuki Muriithi | |
| The "ProbeSetId" value in the file is actually stored in the database in the `ProbeSet.Name` field, whereas the `ProbeSetXRef` table actually uses the `ProbeSet.Id` value to define the relationships. This commit fixes that issue. | |||
| 2023-10-16 | Fix bug: Insert ProbeSets if they do not exist. | Frederick Muriuki Muriithi | |
| 2023-10-16 | Fix bug: Provide the platform_id to `insert_means` | Frederick Muriuki Muriithi | |
| 2023-10-16 | Fix bug: parsing fields from query. | Frederick Muriuki Muriithi | |
| 2022-08-05 | Update job status. Display stdout and stderr outputs | Frederick Muriuki Muriithi | |
| * Display the status of the job, as it is running * Display STDERR output if an error occurs * Display STDOUT output as job is running and on successful completion of the job | |||
| 2022-08-04 | Format queries for output. Get rid of extraneous output. | Frederick Muriuki Muriithi | |
| 2022-07-19 | Save standard error data. Fix linting and typing errors. | Frederick Muriuki Muriithi | |
| 2022-07-19 | Implement data insertion (averages/means) | Frederick Muriuki Muriithi | |
| * quality_control/file_utils.py (new file): extract common file utilities. * quality_control/parsing.py (refactor): extract common file utilities. * scripts/insert_data.py: Implement data insertion for averages/means | |||
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index : gn-uploader | |
| gn-uploader: Data uploader for GeneNetwork |
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