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path: root/r_qtl/r_qtl2_qc.py
AgeCommit message (Expand)Author
2024-02-13Make "FILE_TYPES" part of public interface for module/package.Frederick Muriuki Muriithi
2024-02-12Refactor: Use new decimal places checker.Frederick Muriuki Muriithi
2024-02-12Check for errors in the 'phenose' file.Frederick Muriuki Muriithi
2024-02-12Provide the key for each file listed in the control file.Frederick Muriuki Muriithi
2024-02-08Generalise error retrieval: extract common structure...Extract the common structure into a separate function and pass in checkers that return the errors they find. Frederick Muriuki Muriithi
2024-02-08Use error objects rather than plain tuple values.Frederick Muriuki Muriithi
2024-02-06Check that pheno values are numerical and at least 3 decimal placesFrederick Muriuki Muriithi
2024-02-05Check that data in geno file is valid...Add a function to ensure the values in the geno files are all listed in the control data under the "genotypes" key. Frederick Muriuki Muriithi
2024-02-05Fix linting and type errors.Frederick Muriuki Muriithi
2024-02-05Do general bundle validation and show errors...* Display any and all errors on the UI * Move `validate_bundle` to QC module and refactor to use `missing_files` Frederick Muriuki Muriithi
2024-02-05Retrieve list of all files, and list of missing files...Add QC a function to list all files listed in the control file, and another to list only the files missing from the bundle. Frederick Muriuki Muriithi