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path: root/r_qtl/r_qtl2.py
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2024-01-02Abstract away non-transposed file processingFrederick Muriuki Muriithi
Since the processing of non-transposed files is mostly similar, abstract away the common operations into a separate function and use the function instead of repeating the same pattern of code throughout the codebase.
2024-01-02Cleanup: Fix linting and typing errors and update docs.Frederick Muriuki Muriithi
2023-12-28Rework parsing of transposed geno files.Frederick Muriuki Muriithi
2023-12-28Handle transposed geno files.Frederick Muriuki Muriithi
2023-12-27Tests: Test parsing of non-transposed geno files.Frederick Muriuki Muriithi
Check that the parsing of non-transposed geno files. Leave in failing test for transposed geno files.
2023-12-27Tests: Add tests for parsing gmap files.Frederick Muriuki Muriithi
2023-12-25Generalise to read both genetic and physical maps.Frederick Muriuki Muriithi
2023-12-25Read genetic map filesFrederick Muriuki Muriithi
2023-12-20Read genotype filesFrederick Muriuki Muriithi
2023-12-20Read R/qtl2 format filesFrederick Muriuki Muriithi
* Set up error objects. * Read the control data.